View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19825_low_15 (Length: 329)

Name: NF19825_low_15
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19825_low_15
NF19825_low_15
[»] chr3 (1 HSPs)
chr3 (1-311)||(4084055-4084365)
[»] chr8 (8 HSPs)
chr8 (2-311)||(44301284-44301593)
chr8 (1-311)||(44312182-44312480)
chr8 (65-311)||(43896006-43896247)
chr8 (65-311)||(44306459-44306701)
chr8 (4-68)||(43895902-43895966)
chr8 (89-256)||(43895505-43895669)
chr8 (89-256)||(44305929-44306093)
chr8 (4-59)||(44306353-44306408)
[»] chr6 (1 HSPs)
chr6 (26-311)||(8159130-8159399)
[»] chr4 (1 HSPs)
chr4 (76-311)||(18701618-18701854)
[»] chr5 (1 HSPs)
chr5 (101-215)||(35856941-35857052)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 4084055 - 4084365
Alignment:
Q  1 atgagtaactactaactaatcagagatcaataattaagcaacagattcaccataaaaaataagttataaataagcaacaaaccatagtaaagctaacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4084055 atgagtaactactaactaatcagagatcaataattaagcaacaaattcaccataaaaaataagttataaataagcaacaaaccatagtaaagctaacaag 4084154  T
Q  101 ccaaaccaactggcaagtaggatcatttctctggaatgaatccattcacaccatttgaaaatttctctcatgaatcctttgagaccgaataagcaggaac 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4084155 ccaaaccaactggtaagtaggatcatttctctggaatgaatccattcacaccatttgaaaatttctctcctgaatcctttgagaccgaataagcaggaac 4084254  T
Q  201 atcggcagaagtcattgtatatctaatagacgcgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttctccagca 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4084255 atcggcagaagtcattgtatatctaatagacccgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttctccagca 4084354  T
Q  301 tgagcttcatc 311  Q
    |||||||||||    
T  4084355 tgagcttcatc 4084365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 2 - 311
Target Start/End: Original strand, 44301284 - 44301593
Alignment:
Q  2 tgagtaactactaactaatcagagatcaataattaagcaacagattcaccataaaaaataagttataaataagcaacaaaccatagtaaagctaacaagc 101  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  44301284 tgagtaactactaactaatcagagatcaataattaagcagcagatttaccataaaaaataagttataaataagcaacaaaacatagcaaagctaacaagc 44301383  T
Q  102 caaaccaact-ggcaagtaggatcatttctc-----tggaatgaatccattcacaccatttgaaaatttctctcatgaatcctttgagaccgaataagca 195  Q
    ||||| |||| || ||||||||||||||| |     ||||||||||| ||||||||||||||||||||||||||  ||||| ||||| |||||||||| |    
T  44301384 caaacaaactgggtaagtaggatcatttcactggaatggaatgaatcaattcacaccatttgaaaatttctctccagaatcttttgacaccgaataagta 44301483  T
Q  196 ggaacatcggcagaagtcattgtatatctaatagacgcgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttctc 295  Q
    |||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||      |||    |||||||||||||| |||||    
T  44301484 ggaacatcggcagaagacattgtatatctaacagacccatcagtaaaagtatctccagatttaagaa------caatagctaacacaataacaatttctc 44301577  T
Q  296 cagcatgagcttcatc 311  Q
    | ||||||||||||||    
T  44301578 cggcatgagcttcatc 44301593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 44312182 - 44312480
Alignment:
Q  1 atgagtaactactaactaatcagagatcaataattaagcaacagattcaccat-aaaaaataagttataaataagcaacaaaccatagtaaagctaacaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || | || ||||||    
T  44312182 atgagtaactactaactaatcagagatcaataattaagcaacaaattcaccataaaaaaataagttataaataagcaacaaaccaaagcatagttaacaa 44312281  T
Q  100 gccaaaccaactggc-aagtaggatcatttctctggaatgaatccattcacaccatttgaaaatttctctcatgaatcctttgagaccgaataagcagga 198  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||| | |||||||| ||        ||    
T  44312282 gccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagacgga--------ga 44312373  T
Q  199 acatcggcagaagtcattgtatatctaatagacgcgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttctccag 298  Q
    |||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||| ||||||||||| ||      ||||||| ||||| ||||||||    
T  44312374 acatcggcagaagtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcacca------aacacaaaaacaatttctccag 44312467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 65 - 311
Target Start/End: Original strand, 43896006 - 43896247
Alignment:
Q  65 tataaataagcaacaaaccatagtaaagctaacaagccaaaccaactggc-aagtaggatcatttctctggaatgaatccattcacaccatttgaaaatt 163  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||| ||| || |||||||||||| |||||||||||||||||    
T  43896006 tataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcacttccctagaatgaatccatccacaccatttgaaaatt 43896105  T
Q  164 tctctcatgaatcctttgagaccgaataagcaggaacatcggcagaagtcattgtatatctaatagacgcgtcagtaaaagtatctccagatttaagaat 263  Q
    ||||||  ||||| | |||||  |||||| ||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||    
T  43896106 tctctccagaatcttatgagatagaataatcaggaacatcggcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaat 43896205  T
Q  264 agcatcaaactttaacacaataacaagttctccagcatgagcttcatc 311  Q
    ||||||      ||||||||||| ||  ||||||||||||||||||||    
T  43896206 agcatc------taacacaataataatctctccagcatgagcttcatc 43896247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 65 - 311
Target Start/End: Original strand, 44306459 - 44306701
Alignment:
Q  65 tataaataagcaacaaaccatagtaaagctaacaagccaaaccaactggc-aagtaggatcatttctctggaatgaatccattcacaccatttgaaaatt 163  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||||||| || ||||||||||||||||||||||||||||      
T  44306459 tataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcatttccctagaatgaatccattcacaccatttgaaaaaa 44306558  T
Q  164 -tctctcatgaatcctttgagaccgaataagcaggaacatcggcagaagtcattgtatatctaatagacgcgtcagtaaaagtatctccagatttaagaa 262  Q
     ||||||  ||||| | |||||| ||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  44306559 ctctctccagaatcttatgagacagaataagtaggaacatcggcagaagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagaa 44306658  T
Q  263 tagcatcaaactttaacacaataacaagttctccagcatgagcttcatc 311  Q
     |||||| |||   |||   ||||||| |||||||||||||||||||||    
T  44306659 gagcatcgaac---aac---ataacaatttctccagcatgagcttcatc 44306701  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 43895902 - 43895966
Alignment:
Q  4 agtaactactaactaatcagagatcaataattaagcaacagattcaccataaaaaataagttata 68  Q
    |||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||| ||| |||||    
T  43895902 agtaactactaaataatcagagatcaataattaagcaacaaattccccagaaaaagtaaattata 43895966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 256
Target Start/End: Original strand, 43895505 - 43895669
Alignment:
Q  89 aaagctaacaagccaaaccaactggcaa-gtaggatcatttctctggaatgaatccattcacaccatttgaaaatttctctcatgaatcctttgagaccg 187  Q
    |||||||| |||||||||||||||| || |||||||| ||||| || ||     ||||||| | || ||||||||| | |||  ||||| ||||||||||    
T  43895505 aaagctaataagccaaaccaactgggaaagtaggatcctttctttgaaaa----ccattcaaagcagttgaaaattgccctccagaatcttttgagaccg 43895600  T
Q  188 aataagcaggaacatcggcagaagtcattgtatatctaatagacgcgtcagtaaaagtatctccagatt 256  Q
    || ||| | ||| || | |||| ||||||| |||||||| |||| | |||| |||||||||||||||||    
T  43895601 aacaagtaagaatattgacagaggtcattgaatatctaacagacccatcagcaaaagtatctccagatt 43895669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 256
Target Start/End: Original strand, 44305929 - 44306093
Alignment:
Q  89 aaagctaacaagccaaaccaactggcaa-gtaggatcatttctctggaatgaatccattcacaccatttgaaaatttctctcatgaatcctttgagaccg 187  Q
    ||||||||||||||||||||||||| || |||||||| ||||| || ||     ||||||| | || ||||||||| | |||  ||||| ||||||||||    
T  44305929 aaagctaacaagccaaaccaactgggaaagtaggatcctttctttgaaaa----ccattcaaagcacttgaaaattgccctccagaatcttttgagaccg 44306024  T
Q  188 aataagcaggaacatcggcagaagtcattgtatatctaatagacgcgtcagtaaaagtatctccagatt 256  Q
    || ||| | ||| || | |||| ||||||| ||||||||  ||| | |||| |||||||||||||||||    
T  44306025 aacaagtaagaatattgacagaggtcattgaatatctaacggacccatcagcaaaagtatctccagatt 44306093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 44306353 - 44306408
Alignment:
Q  4 agtaactactaactaatcagagatcaataattaagcaacagattcaccataaaaaa 59  Q
    |||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||    
T  44306353 agtaactactaaataatcagagatcaataattaagcaacaaattccccagaaaaaa 44306408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 311
Target Start/End: Complemental strand, 8159399 - 8159130
Alignment:
Q  26 atcaataattaagcaacagattcaccataaaaaataagttataaataagcaacaaaccatagtaaagctaacaagccaaaccaactggcaagtaggatca 125  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | |||||||| || ||||||||| |             |    
T  8159399 atcaataattaagcaacagattcagcataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaatt-------------a 8159313  T
Q  126 tttctctggaatgaatccattcacaccatttgaaaatttctctcatgaatcctttgagaccgaataagcaggaacat---cggcagaagtcattgtatat 222  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||   | |||||||||||| |||||    
T  8159312 tttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcagcagcagaagtcattatatat 8159213  T
Q  223 ctaatagacgcgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttctccagcatgagcttcatc 311  Q
    |||| |||| | || ||||||||||||||||||| ||||  |||||||      ||||||| ||||| |||||||||||||||||||||    
T  8159212 ctaacagacccatcggtaaaagtatctccagattcaagatgagcatca------aacacaaaaacaatttctccagcatgagcttcatc 8159130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 311
Target Start/End: Original strand, 18701618 - 18701854
Alignment:
Q  76 aacaaaccatagtaaagctaacaagccaaaccaactggc-aagtaggatcatt---tctctggaatgaatccattcacaccatttgaaaatttctctcat 171  Q
    |||||||||| | |||||||| || |||||||||| ||  |||||||||||||   ||||| ||||||||| ||||||||||||||||||| | |  |      
T  18701618 aacaaaccattgcaaagctaataaaccaaaccaacagggtaagtaggatcattatttctctagaatgaatcaattcacaccatttgaaaatgtatgcccg 18701717  T
Q  172 gaatcctttgagaccgaataagcaggaacatcggcagaagtcattgtatatctaatagacgc---gtcagtaaaagtatctccagatttaagaatagcat 268  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |   | | ||||||||||||||||||| ||||  |||||    
T  18701718 gaatcttttgagaccgaataagcaggaacatcagcagaagtcattgtatatctaacagacccattggcggtaaaagtatctccagattcaagatgagcat 18701817  T
Q  269 caaactttaacacaataacaagttctccagcatgagcttcatc 311  Q
    ||      || |||| ||||| |||||||||||||||||||||    
T  18701818 ca------aaaacaaaaacaatttctccagcatgagcttcatc 18701854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 35857052 - 35856941
Alignment:
Q  101 ccaaaccaactggc-aagtaggatcatttctctggaatgaatccattcacaccatttgaaaatttctctcatgaatcctttgagaccgaataagcaggaa 199  Q
    |||||||||||||  |||||||||||||||||||     |||||||||||| |||||||| ||| ||| |  ||||| ||||||||||||||| || |||    
T  35857052 ccaaaccaactgggtaagtaggatcatttctctg----taatccattcacaacatttgaagattgctcgctagaatcttttgagaccgaataatcaagaa 35856957  T
Q  200 catcggcagaagtcat 215  Q
    ||| ||||||||||||    
T  35856956 cattggcagaagtcat 35856941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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