View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19825_low_17 (Length: 320)

Name: NF19825_low_17
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19825_low_17
NF19825_low_17
[»] chr4 (1 HSPs)
chr4 (10-303)||(42188318-42188611)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 42188611 - 42188318
Alignment:
Q  10 agtgagatgaaaaactgaacattgaacaacnnnnnnnttagggaaaacagaatcaaaattatcacaacaaagaacgagattgaaaaattagcttaccatc 109  Q
    ||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42188611 agtgacatgaaaaactgaacattgaacaacaaaaaaattagggaaaacagaatcaaaattatcacaacaaagaatgagattgaaaaattagcttaccatc 42188512  T
Q  110 catgaaccatcttccatcagatgaaacatatgctttcttaataaaaaggtttaaatcactgagaatttgtacagcttccaaaagaattccatgctttctg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42188511 catgaaccatcttccatcagatgaaacatatgctttcttaataaaaaggtttaaatcactgagaatttgtacagcttccaaaagaattccatgctttctg 42188412  T
Q  210 gcactatcaaactgtgaaattaaatcaaaacagaaagattagtatcttaattaaaaattttacatgtaaacccaaattaattaaggaattttct 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  42188411 gcactatcaaactgtgaaattaaatcaaaacagaaagattagtatcttaattacattttttacatgtaaacccaaattaattaaggaattttct 42188318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University