View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19825_low_18 (Length: 289)
Name: NF19825_low_18
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19825_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 565559 - 565805
Alignment:
| Q |
17 |
tgaaggagctcacattgtcatcgtttgtctagttttagatatcttgtattgttcttatgattcccgactataccatcattacaacaacaacaacaaaaaa |
116 |
Q |
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| T |
565559 |
tgaaggagctcacattgtcatcgtttgtctagttttagatatcttgtattgttcttatgattcccgactataccatcattacaacaacaacaacaaaaaa |
565658 |
T |
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| Q |
117 |
tccaagccttataaaagtaagtagatttaatcataatagattttatagatttaatcttctgaggnnnnnnntacttaagcagataatcgaagatgtttta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
565659 |
tccaagccttataaaagtaagtagatttaatcataatagattttatagatttaatcttctgaggaaaaaaatacttaagcagataatcgaagatgtttta |
565758 |
T |
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| Q |
217 |
ttgagatttgattgagtttatatattcaaaaagtacaacacataaaa |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
565759 |
ttgagatttgattgagtttatatattcaaaaagtacaacacataaaa |
565805 |
T |
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