View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19825_low_22 (Length: 268)

Name: NF19825_low_22
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19825_low_22
NF19825_low_22
[»] chr8 (3 HSPs)
chr8 (168-256)||(35848241-35848329)
chr8 (16-81)||(35848089-35848154)
chr8 (20-81)||(5691213-5691271)
[»] chr2 (1 HSPs)
chr2 (20-81)||(41425754-41425812)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 35848241 - 35848329
Alignment:
Q  168 aggtagttcaagttcaacaaaaagaagtagtggatcaaatgaaagaagaagaaatggtgtaagacaatatgttagatcaaagatgccta 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35848241 aggtagttcaagttcaacaaaaagaagtagtggatcaaatgaaagaagaagaaatggtgtaagacaatatgttagatcaaagatgccta 35848329  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 35848089 - 35848154
Alignment:
Q  16 cataataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgttaac 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35848089 cataataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgttaac 35848154  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 5691213 - 5691271
Alignment:
Q  20 ataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgttaac 81  Q
    ||||||| |||||||||||||||||||| ||||||||||    |||||||||||||||||||    
T  5691213 ataagtgctcaatatcctttgatttgaaagaagaagcta---ttagtgatcaagatgttaac 5691271  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 41425812 - 41425754
Alignment:
Q  20 ataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgttaac 81  Q
    ||||||| |||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  41425812 ataagtgctcaatatcctttgatttgaatgaagaagcta---ttagtgatcaagatgttaac 41425754  T

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