View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19825_low_24 (Length: 266)
Name: NF19825_low_24
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19825_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42198140 - 42198375
Alignment:
| Q |
1 |
atgtttctcttgtgttttttacctgcaacatacaaagttactcccaacttgtgcataacttgacttgattgttaaggccgcatagtttgttgttaccttg |
100 |
Q |
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| T |
42198140 |
atgtttctcttgtgttttttacctgcaacatacaaagttactcccaacttgtgcataactt-----gattgttaaggccgcatagtttgttgttaccttg |
42198234 |
T |
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| Q |
101 |
gagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgttgaaagacaaatttaatctcaccatatactccagcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198235 |
gagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgttgaaagacaaatttaatctcaccatatactccagcttt |
42198334 |
T |
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| Q |
201 |
tctaaactatcaggaattagaccagtgagattgtttgatga |
241 |
Q |
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| T |
42198335 |
tctaaactatcaggaattagaccagtgagattgtttgatga |
42198375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 42210716 - 42210958
Alignment:
| Q |
1 |
atgtttctcttgtgttttttacctgcaacatacaaagttactcccaacttgtgcataacttgacttgattgttaaggccgcatagtttgttgttaccttg |
100 |
Q |
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||||||||||||| ||| |||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
42210716 |
atgtttctcttgtttttcttacctgcaacacacaaagtgactcctaacttgtgcataactt-----gattgttaaggccacatagtttgttgttaccttg |
42210810 |
T |
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| Q |
101 |
gagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgttgaaagacaaatttaatctcaccatatactccagcttt |
200 |
Q |
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| T |
42210811 |
gagatcaacctggcttaggttcataaaaataccttccataggaacttccccttccaatttgttgaaggacaaatttaatttcaccatatacttgagcttt |
42210910 |
T |
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| Q |
201 |
tctaaactatcaggaattagaccagtgagattgtttgatgatagatct |
248 |
Q |
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|||||||| ||||| ||| ||||||||||| ||||||||||||||||| |
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| T |
42210911 |
tctaaactctcagggattggaccagtgagactgtttgatgatagatct |
42210958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 63 - 242
Target Start/End: Complemental strand, 33701108 - 33700929
Alignment:
| Q |
63 |
acttgattgttaaggccgcatagtttgttgttaccttggagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgt |
162 |
Q |
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|||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| | || |
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| T |
33701108 |
acttcattgttaacgccacatagtttgttgttaccttggagatcaacctagcttaggttcataaaaacaccttccataggaacttccccttccaatttgt |
33701009 |
T |
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| Q |
163 |
tgaaagacaaatttaatctcaccatatactccagcttttctaaactatcaggaattagaccagtgagattgtttgatgat |
242 |
Q |
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| T |
33701008 |
tgaaggacaaatttaatttcatcatatactcaagcttttctaaactcacgggaattggaccagtgagattgtttgatgat |
33700929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 42222989 - 42223174
Alignment:
| Q |
63 |
acttgattgttaaggccgcatagtttgttgttaccttggagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgt |
162 |
Q |
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|||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||| || |||||||| | || |
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| T |
42222989 |
acttcattgttaaggccacatagtttgttgttaccttggatatcaacctggcttaggttcataaaaacgccttccataggaacttccccttccaatttgt |
42223088 |
T |
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| Q |
163 |
tgaaagacaaatttaatctcaccatatactccagcttttctaaactatcaggaattagaccagtgagattgtttgatgatagatct |
248 |
Q |
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|||| |||||||||||| ||| ||||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
42223089 |
tgaaggacaaatttaatttcatcatatactcaagcttttctaaactcacgggaattgaaccagtgagattgtttgatgatagatct |
42223174 |
T |
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