View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19825_low_29 (Length: 250)
Name: NF19825_low_29
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19825_low_29 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 73 - 250
Target Start/End: Complemental strand, 43360025 - 43359847
Alignment:
| Q |
73 |
aagaccttacataaatctctactctatctatcatatttatccttatgcaactttgttatcctataatatgtctattgagttttccaaatgacatattaca |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43360025 |
aagaccttacataaatctctactctatctatcatatttatccttatgcaactttgttatcctataatatgtctattgagttttccaaatgatatattaca |
43359926 |
T |
|
| Q |
173 |
tggttagcagattatagatgtatttattacta-cttttataattttatttcatccctttgcaaggggttcaatcatgca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43359925 |
tggttagcagattatagatgtatttattactacctttaataattttatttcatccctttgcaaggggttcaatcatgca |
43359847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 43360129 - 43360078
Alignment:
| Q |
12 |
gaatatgttagaatatatatattattaaaagaagaagaataatacatgctat |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43360129 |
gaatatgttagaatatatatattattaaaagaagaagaataatacatgctat |
43360078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University