View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19825_low_32 (Length: 237)

Name: NF19825_low_32
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19825_low_32
NF19825_low_32
[»] chr6 (15 HSPs)
chr6 (9-223)||(21140593-21140807)
chr6 (11-216)||(21209398-21209599)
chr6 (9-213)||(21155546-21155748)
chr6 (9-223)||(21205744-21205956)
chr6 (16-223)||(21274608-21274813)
chr6 (9-223)||(21174911-21175119)
chr6 (55-223)||(21296038-21296206)
chr6 (9-177)||(21355185-21355351)
chr6 (16-174)||(21244121-21244277)
chr6 (114-223)||(21212989-21213098)
chr6 (75-118)||(21233937-21233980)
chr6 (14-148)||(21151377-21151509)
chr6 (127-174)||(21187586-21187633)
chr6 (172-223)||(21233887-21233938)
chr6 (128-174)||(21186959-21187005)
[»] scaffold1787 (1 HSPs)
scaffold1787 (86-223)||(1046-1183)
[»] scaffold0060 (2 HSPs)
scaffold0060 (122-223)||(23075-23176)
scaffold0060 (9-94)||(22815-22898)
[»] chr5 (2 HSPs)
chr5 (121-208)||(2323279-2323366)
chr5 (121-176)||(2323105-2323160)
[»] scaffold0016 (1 HSPs)
scaffold0016 (156-223)||(36174-36241)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 21140807 - 21140593
Alignment:
Q  9 caagaaaataatattcctaaccggttttattttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttccttatgcttgttaaatgt 108  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21140807 caagaaaataatattcctaaccggttttactttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttccttatgtttgttaaatgt 21140708  T
Q  109 cttgtatttccgatttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtt 208  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21140707 cttgtatttccggtttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtt 21140608  T
Q  209 tgattatgtgatttt 223  Q
    |||||||||||||||    
T  21140607 tgattatgtgatttt 21140593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 21209599 - 21209398
Alignment:
Q  11 agaaaataatattcctaaccggttttattttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttccttatgcttgttaaatgtct 110  Q
    |||||||||||||| |||| ||||||||||||  || |||||| |||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||||    
T  21209599 agaaaataatattcttaactggttttattttg--atctttttccttaatcagtccgacaatgattgatgaaaacttgttcattaagcttgttaaatgtct 21209502  T
Q  111 tgtatttccgatttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtttg 210  Q
    |||||||||| |||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||  |||||| |||||||||||||||||||||||    
T  21209501 tgtatttccggtttgtccattgaacatgaaaattctaattaggttaagagatttctaactatctgtgt--aatatcgaaaggtacatgtaaataagtttg 21209404  T
Q  211 attatg 216  Q
    ||||||    
T  21209403 attatg 21209398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 21155748 - 21155546
Alignment:
Q  9 caagaaaataatattcctaaccggttttattttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttccttatgcttgttaaatgt 108  Q
    |||||| ||| ||||| |||| |||||||||| |  || |||||  | ||||||| ||| |||  || |||||||||||||||||| || | ||||||||    
T  21155748 caagaatatagtattcgtaactggttttatttgg--atcttttttctaaatcagtatgataattattcatgaaaacttgttccttaagccttttaaatgt 21155651  T
Q  109 cttgtatttccgatttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtt 208  Q
    || ||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||| ||||||||||||||||    
T  21155650 ctagtatttccagtttgtccattgaacatgaaaattcaaattagattaagagatttctaaccatttgtgtgcaatatcgaaagatacatgtaaataagtt 21155551  T
Q  209 tgatt 213  Q
    |||||    
T  21155550 tgatt 21155546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 21205956 - 21205744
Alignment:
Q  9 caagaaaataatattcctaaccggttttattttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttccttatgcttgttaaatgt 108  Q
    ||||||||| |||||| |||| |||||||||||||| | |||||||| | ||||| ||| |||| ||||||||||||||||||||| ||   ||||||||    
T  21205956 caagaaaatcatattcttaactggttttattttggtct-tttttcttga-tcagtatgataatgattgatgaaaacttgttccttaagccatttaaatgt 21205859  T
Q  109 cttgtatttccgatttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtt 208  Q
     | |||| |||  |||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||| ||||||| |||| | || |||||||||||    
T  21205858 atagtatatccagtttgtccattgaacatgaaaatacaaattagattaagagatttctaatcatttgtgtgcaatatcgaaagatgcaagtaaataagtt 21205759  T
Q  209 tgattatgtgatttt 223  Q
    ||||| |||||||||    
T  21205758 tgattgtgtgatttt 21205744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 21274813 - 21274608
Alignment:
Q  16 ataatattcctaaccggttttattttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttccttatgcttgttaaatgtcttgtat 115  Q
    ||||||||| |||| |||||||  ||||| | |||||||| ||||||| ||| |||| || ||||||| |||||||||| || ||||||||| | || ||    
T  21274813 ataatattcttaactggttttaaattggtct-tttttctt-aatcagtatgataatgatttatgaaaatttgttccttaagcctgttaaatgccctgcat 21274716  T
Q  116 ttccgatttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtttgattat 215  Q
    |||   |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||  ||||||||||||||||||||| |    
T  21274715 ttcaagtttgtccattgagcatgaaaattcaaattagattaagagatttctaaccatgtgtgtgcaatatcgaaatatacatgtaaataagtttgattgt 21274616  T
Q  216 gtgatttt 223  Q
     |||||||    
T  21274615 ttgatttt 21274608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 21175119 - 21174911
Alignment:
Q  9 caagaaaataatattcctaaccggttttattttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttccttatgcttgttaaatgt 108  Q
    |||||||||||||||| |||| ||||||||||| ||   |||||||  ||||| | ||| |||| |||||| ||| |||||| ||| || ||||||||||    
T  21175119 caagaaaataatattcttaactggttttatttttgtcc-tttttctg-aatcaatatgataatgattgatgcaaatttgttctttaagcctgttaaatgt 21175022  T
Q  109 cttgtatttccgatttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtt 208  Q
      ||  ||||   ||||||||||||||||||||||||||||||||    ||||| || |||||||||||| ||||||| |||| ||||||||||||||||    
T  21175021 tctgcttttcaagtttgtccattgaacatgaaaattcaaattaga----gagatatcgaaccatctgtgtgcaatatcgaaagatacatgtaaataagtt 21174926  T
Q  209 tgattatgtgatttt 223  Q
    ||||| ||| |||||    
T  21174925 tgattgtgtaatttt 21174911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 21296206 - 21296038
Alignment:
Q  55 ttaatcagtctgacaatggttgatgaaaacttgttccttatgcttgttaaatgtcttgtatttccgatttgtccattgaacatgaaaattcaaattagat 154  Q
    ||||||||| ||| |||| |||||||||| ||||| |||| || ||| ||||||| || ||||| | ||||||| | |||||| ||||| || |||||||    
T  21296206 ttaatcagtatgagaatgattgatgaaaatttgtttcttaagcctgtgaaatgtcctgcatttctggtttgtccgtcgaacataaaaatgcatattagat 21296107  T
Q  155 caagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtttgattatgtgatttt 223  Q
     ||||||||||||| ||| ||||| | ||||| ||||   |||||||||||||||| || |||||||||    
T  21296106 taagagatttctaatcatttgtgtgccatatcgaaagacgcatgtaaataagtttggttgtgtgatttt 21296038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 21355351 - 21355185
Alignment:
Q  9 caagaaaataatattcctaaccggttttattttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttccttatgcttgttaaatgt 108  Q
    |||||| ||||||||| |||| |||||||||||||| | |||||| ||||||||| ||| |||| || ||||||| |||||||||| || |||||||||     
T  21355351 caagaatataatattcgtaactggttttattttggtct-tttttc-ttaatcagtatgataatgatttatgaaaatttgttccttaagcgtgttaaatgc 21355254  T
Q  109 cttgtatttccgatttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtg 177  Q
    | ||||| ||   ||||| |||||| |||||| ||| ||||||||| ||||||||| ||||||| ||||    
T  21355253 catgtatctctagtttgttcattgagcatgaatatttaaattagattaagagatttttaaccatttgtg 21355185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 21244121 - 21244277
Alignment:
Q  16 ataatattcctaaccggttttattttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttccttatgcttgttaaatgtcttgtat 115  Q
    ||||||||| |||| |||||||||||||| | |||||||| || || ||| | |||| ||||||||||  ||||||||| || ||||||||| | | |||    
T  21244121 ataatattcttaactggttttattttggtct-tttttctt-aaccattctaataatgattgatgaaaatctgttccttaagcgtgttaaatgccctttat 21244218  T
Q  116 ttccgatttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatct 174  Q
     |||  ||||| |||||||||||||||| |||| ||||| |||||||||||||| ||||    
T  21244219 ctcctgtttgttcattgaacatgaaaatgcaaactagattaagagatttctaacaatct 21244277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 21213098 - 21212989
Alignment:
Q  114 atttccgatttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtttgatt 213  Q
    ||||||| ||||||  |||||||| |||||||| | ||||| |||| ||||| || ||||||||| ||||||| |||| | |||||||||||||||||||    
T  21213098 atttccggtttgtcggttgaacatcaaaattcatagtagattaagacatttccaatcatctgtgtgcaatatcgaaagatgcatgtaaataagtttgatt 21212999  T
Q  214 atgtgatttt 223  Q
     |||||||||    
T  21212998 gtgtgatttt 21212989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 21233980 - 21233937
Alignment:
Q  75 tgatgaaaacttgttccttatgcttgttaaatgtcttgtatttc 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  21233980 tgatgaaaacttgttccttatgcttgttaaatgacttgtatttc 21233937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 21151509 - 21151377
Alignment:
Q  14 aaataatattcctaaccggttttattttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttccttatgcttgttaaatgtcttgt 113  Q
    |||| |||||| |||| | |||||||||||| | |||||||| ||||||| ||| |||| ||||| |||| |||||||||| || | |||||| | || |    
T  21151509 aaatcatattcttaactgattttattttggtct-tttttctt-aatcagtatgagaatgattgatcaaaatttgttccttaagccttttaaatttattct 21151412  T
Q  114 atttccgatttgtccattgaacatgaaaattcaaa 148  Q
    ||||    ||||||||||||||||||||| |||||    
T  21151411 atttgaattttgtccattgaacatgaaaactcaaa 21151377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 21187633 - 21187586
Alignment:
Q  127 ccattgaacatgaaaattcaaattagatcaagagatttctaaccatct 174  Q
    ||||||||||||||||| |||| ||||| |||||||||||||| ||||    
T  21187633 ccattgaacatgaaaatgcaaactagattaagagatttctaacaatct 21187586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 21233938 - 21233887
Alignment:
Q  172 tctgtgtacaatatcaaaaggtacatgtaaataagtttgattatgtgatttt 223  Q
    ||||||| ||||||| |||||||||| ||||||||||||||| ||| |||||    
T  21233938 tctgtgtgcaatatcgaaaggtacatataaataagtttgattgtgtcatttt 21233887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 21187005 - 21186959
Alignment:
Q  128 cattgaacatgaaaattcaaattagatcaagagatttctaaccatct 174  Q
    |||||||||||||||| |||| ||||| |||||||||||||| ||||    
T  21187005 cattgaacatgaaaatgcaaactagattaagagatttctaacaatct 21186959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1787 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 1046 - 1183
Alignment:
Q  86 tgttccttatgcttgttaaatgtcttgtatttccgatttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatat 185  Q
    |||||| || || |||||||| ||||||||||||| |||||||||||||||||||||| |||| || || || ||||||||||||||||| || ||||||    
T  1046 tgttccgtaagcctgttaaatatcttgtatttccggtttgtccattgaacatgaaaatgcaaactatataaatagatttctaaccatctgggtgcaatat 1145  T
Q  186 caaaaggtacatgtaaataagtttgattatgtgatttt 223  Q
       ||| ||||||||||||||||||||| |||| ||||    
T  1146 gggaagatacatgtaaataagtttgattgtgtggtttt 1183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 23075 - 23176
Alignment:
Q  122 tttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtttgattatgtgatt 221  Q
    ||||||||||||||||||||| | ||| ||| | |||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  23075 tttgtccattgaacatgaaaacttaaactagtttaagagatttctacccatctgtgtgcaatatcaaaagatacatgtaaataagtttgattgtgtgatt 23174  T
Q  222 tt 223  Q
    ||    
T  23175 tt 23176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 22815 - 22898
Alignment:
Q  9 caagaaaataatattcctaaccggttttattttggtatatttttctttaatcagtctgacaatggttgatgaaaacttgttcctta 94  Q
    |||||||||||||||| |||| ||||||||||| || | |||||| ||||||||| ||| |||  |||||||||||||||||||||    
T  22815 caagaaaataatattcttaactggttttatttttgtct-tttttc-ttaatcagtatgataattattgatgaaaacttgttcctta 22898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 2323279 - 2323366
Alignment:
Q  121 atttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtt 208  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||| ||| |||||||||| || |||||||||||||    
T  2323279 atttgtccattgaacatgaaaatgcaaattagatgatgagatttctaagcatctgtataccatatcaaaagatatatgtaaataagtt 2323366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 2323105 - 2323160
Alignment:
Q  121 atttgtccattgaacatgaaaattcaaattagatcaagagatttctaaccatctgt 176  Q
    ||||||||| ||||||||| ||| |||||||||| ||||||||||||| |||||||    
T  2323105 atttgtccactgaacatgacaatgcaaattagataaagagatttctaagcatctgt 2323160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 36174 - 36241
Alignment:
Q  156 aagagatttctaaccatctgtgtacaatatcaaaaggtacatgtaaataagtttgattatgtgatttt 223  Q
    ||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  36174 aagagatttctaaccatttgtgtgcaatattaaaagatacatgtaaataagtttgattatgtgatttt 36241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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