View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19825_low_4 (Length: 460)

Name: NF19825_low_4
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19825_low_4
NF19825_low_4
[»] chr4 (6 HSPs)
chr4 (10-444)||(22429278-22429712)
chr4 (63-116)||(35105192-35105245)
chr4 (65-109)||(26489900-26489944)
chr4 (82-119)||(15341707-15341744)
chr4 (65-109)||(21660169-21660213)
chr4 (65-109)||(21668933-21668977)
[»] chr8 (2 HSPs)
chr8 (63-116)||(6164855-6164908)
chr8 (69-109)||(25058670-25058710)
[»] chr5 (5 HSPs)
chr5 (71-111)||(36819435-36819475)
chr5 (22-121)||(24652863-24652967)
chr5 (65-120)||(14495830-14495885)
chr5 (35-109)||(27769082-27769154)
chr5 (66-109)||(40461639-40461682)
[»] chr2 (3 HSPs)
chr2 (63-117)||(18372261-18372315)
chr2 (64-117)||(23922146-23922199)
chr2 (12-40)||(18718118-18718146)
[»] scaffold0187 (2 HSPs)
scaffold0187 (68-123)||(12450-12505)
scaffold0187 (68-123)||(22778-22833)
[»] chr1 (6 HSPs)
chr1 (65-116)||(29817675-29817726)
chr1 (57-96)||(50919974-50920013)
chr1 (68-117)||(14787364-14787413)
chr1 (37-109)||(37400281-37400351)
chr1 (80-112)||(47720834-47720866)
chr1 (80-112)||(47727826-47727858)
[»] chr7 (1 HSPs)
chr7 (65-119)||(22760860-22760914)
[»] chr3 (5 HSPs)
chr3 (65-99)||(5499432-5499466)
chr3 (60-110)||(26411551-26411601)
chr3 (21-93)||(19154654-19154724)
chr3 (65-113)||(4844536-4844584)
chr3 (65-113)||(4870232-4870280)
[»] scaffold0517 (1 HSPs)
scaffold0517 (37-109)||(7725-7795)
[»] chr6 (2 HSPs)
chr6 (38-94)||(26395570-26395624)
chr6 (65-105)||(13469161-13469201)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 444
Target Start/End: Complemental strand, 22429712 - 22429278
Alignment:
Q  10 attattctactcaaattgacatcgaagagaatcaaacttgagactttttaagaatgagcacactctcaggtctcaagtcaataccaccagatcaatccaa 109  Q
    |||||||||||||||||||||||||||| |||| ||  ||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||   ||    
T  22429712 attattctactcaaattgacatcgaagataatcgaatctgaaactttttgagaatgagcacactcttaggtctcaagtcaataccaccagatcaacttaa 22429613  T
Q  110 atgagttaatattttgaattggttaattacaaagattctcttttcttatgagaagatggttgtgtccaaagagaaagaggtgaacgaccattcaccaacc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22429612 atgagttaatattttgaattggttaattacaaagattctcttttcttatgagaagatggttgtgtccaaagagaaagaggtgaacgaccattcaccaacc 22429513  T
Q  210 ttgccccccaacattaattttggccaattaagtcccttgnnnnnnnnnnnntgtagacacatactatagtacacacgcacgcccacatattatgcaaaaa 309  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22429512 ttgccccccaacattaattttggccaattaagtcccttgcacacacacacatgtagacacatactatagtacacacgcacgcccacatattatgcaaaaa 22429413  T
Q  310 gacactagttataagagactattgtctttattttaattaatttttgaataataagagactaaatctttgatgatggatgaattagtatagtcttggtaga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22429412 gacactagttataagagactattgtctttattttaattaatttttaaataataagagactaaatctttgatgatggatgaattagtatagtcttggtaga 22429313  T
Q  410 taggcttgtctctgtcgtggtagcaatgtatccta 444  Q
    |||||||||||||||||||||||||||||||||||    
T  22429312 taggcttgtctctgtcgtggtagcaatgtatccta 22429278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 35105245 - 35105192
Alignment:
Q  63 atgagcacactctcaggtctcaagtcaataccaccagatcaatccaaatgagtt 116  Q
    |||||||||||||||||||| ||| |||||||| ||||||||  ||||||||||    
T  35105245 atgagcacactctcaggtcttaagccaataccatcagatcaactcaaatgagtt 35105192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 26489900 - 26489944
Alignment:
Q  65 gagcacactctcaggtctcaagtcaataccaccagatcaatccaa 109  Q
    |||||||||||||||||  |||||||||||||||| |||||||||    
T  26489900 gagcacactctcaggtccaaagtcaataccaccaggtcaatccaa 26489944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 15341744 - 15341707
Alignment:
Q  82 tcaagtcaataccaccagatcaatccaaatgagttaat 119  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  15341744 tcaagtcaataccaccagaccaatccaagtgagttaat 15341707  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 21660169 - 21660213
Alignment:
Q  65 gagcacactctcaggtctcaagtcaataccaccagatcaatccaa 109  Q
    |||||||||| ||| ||||||||||||||||||||| ||| ||||    
T  21660169 gagcacactcccagatctcaagtcaataccaccagaccaacccaa 21660213  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 21668933 - 21668977
Alignment:
Q  65 gagcacactctcaggtctcaagtcaataccaccagatcaatccaa 109  Q
    |||||||||| ||| ||||||||||||||||||||| ||| ||||    
T  21668933 gagcacactcccagatctcaagtcaataccaccagaccaacccaa 21668977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 6164855 - 6164908
Alignment:
Q  63 atgagcacactctcaggtctcaagtcaataccaccagatcaatccaaatgagtt 116  Q
    |||||||||||||||||||||| |||||||||| ||||||||  ||||||||||    
T  6164855 atgagcacactctcaggtctcaggtcaataccatcagatcaactcaaatgagtt 6164908  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 25058670 - 25058710
Alignment:
Q  69 acactctcaggtctcaagtcaataccaccagatcaatccaa 109  Q
    ||||||||||||| |||||||||||||||||| ||| ||||    
T  25058670 acactctcaggtcccaagtcaataccaccagaccaaaccaa 25058710  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 36819435 - 36819475
Alignment:
Q  71 actctcaggtctcaagtcaataccaccagatcaatccaaat 111  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  36819435 actctcaggtctcaagtcaataccactagatcaatccaaat 36819475  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 24652967 - 24652863
Alignment:
Q  22 aaattgacatcgaagagaatcaaacttgagacttttta-----agaatgagcacactctcaggtctcaagtcaataccaccagatcaatccaaatgagtt 116  Q
    |||||||||||||||||||||||||  || ||||| ||     || | || ||||||| ||  ||||||||||||||||||||| |||||||| ||||||    
T  24652967 aaattgacatcgaagagaatcaaacccgatactttatactctaaggaggaacacactcccaaatctcaagtcaataccaccagaccaatccaagtgagtt 24652868  T
Q  117 aatat 121  Q
     ||||    
T  24652867 tatat 24652863  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 14495830 - 14495885
Alignment:
Q  65 gagcacactctcaggtctcaagtcaataccaccagatcaatccaaatgagttaata 120  Q
    |||||||||| ||| || |||||||||||||||||| ||| ||||||| |||||||    
T  14495830 gagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggttaata 14495885  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 27769082 - 27769154
Alignment:
Q  35 agagaatcaaacttgagactttttaagaatgagcacactctcaggtctcaagtcaataccaccagatcaatccaa 109  Q
    |||||||||||| |||| ||||  ||||| ||||||||| |||| ||||||| ||||| ||| ||||||||||||    
T  27769082 agagaatcaaacatgagtcttt--aagaacgagcacactttcagatctcaagccaataacactagatcaatccaa 27769154  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 40461639 - 40461682
Alignment:
Q  66 agcacactctcaggtctcaagtcaataccaccagatcaatccaa 109  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||    
T  40461639 agcacactctcaagtctcaagttaataccaccagatcaacccaa 40461682  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 18372315 - 18372261
Alignment:
Q  63 atgagcacactctcaggtctcaagtcaataccaccagatcaatccaaatgagtta 117  Q
    ||||||| ||||||||||||||||||||||||| ||   ||||||||||||||||    
T  18372315 atgagcatactctcaggtctcaagtcaataccatcatgccaatccaaatgagtta 18372261  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 23922146 - 23922199
Alignment:
Q  64 tgagcacactctcaggtctcaagtcaataccaccagatcaatccaaatgagtta 117  Q
    |||||| ||| ||||||| |||||||||||||| || |||||||||||| ||||    
T  23922146 tgagcatactttcaggtcccaagtcaataccactaggtcaatccaaatgggtta 23922199  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 18718118 - 18718146
Alignment:
Q  12 tattctactcaaattgacatcgaagagaa 40  Q
    |||||||||||||||||||||||||||||    
T  18718118 tattctactcaaattgacatcgaagagaa 18718146  T

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Target: scaffold0187 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 12450 - 12505
Alignment:
Q  68 cacactctcaggtctcaagtcaataccaccagatcaatccaaatgagttaatattt 123  Q
    |||||| |||||| ||||||||||||||||||  ||| ||||||| ||||||||||    
T  12450 cacactttcaggtttcaagtcaataccaccaggccaacccaaatgggttaatattt 12505  T

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Target: scaffold0187; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 22778 - 22833
Alignment:
Q  68 cacactctcaggtctcaagtcaataccaccagatcaatccaaatgagttaatattt 123  Q
    |||||| |||||| ||||||||||||||||||  ||| ||||||| ||||||||||    
T  22778 cacactttcaggtttcaagtcaataccaccaggccaacccaaatgggttaatattt 22833  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 29817726 - 29817675
Alignment:
Q  65 gagcacactctcaggtctcaagtcaataccaccagatcaatccaaatgagtt 116  Q
    |||||||||||||||||||||||||||| ||||||  ||| |||| ||||||    
T  29817726 gagcacactctcaggtctcaagtcaatatcaccaggccaacccaagtgagtt 29817675  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 50920013 - 50919974
Alignment:
Q  57 ttaagaatgagcacactctcaggtctcaagtcaataccac 96  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  50920013 ttaaggatgagcacactctcaggtttcaagtcaataccac 50919974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 14787364 - 14787413
Alignment:
Q  68 cacactctcaggtctcaagtcaataccaccagatcaatccaaatgagtta 117  Q
    ||||||||||||||||||||||||||||| || ||||  ||| |||||||    
T  14787364 cacactctcaggtctcaagtcaataccactaggtcaactcaagtgagtta 14787413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 37400351 - 37400281
Alignment:
Q  37 agaatcaaacttgagactttttaagaatgagcacactctcaggtctcaagtcaataccaccagatcaatccaa 109  Q
    |||||| |||||||||| ||  ||| | ||||||||| |||||||||||| ||||||||||||| ||| ||||    
T  37400351 agaatcgaacttgagacctt--aaggaggagcacactttcaggtctcaagccaataccaccagaccaacccaa 37400281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 47720866 - 47720834
Alignment:
Q  80 tctcaagtcaataccaccagatcaatccaaatg 112  Q
    ||||||||||||||||||||||||| |||||||    
T  47720866 tctcaagtcaataccaccagatcaacccaaatg 47720834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 47727858 - 47727826
Alignment:
Q  80 tctcaagtcaataccaccagatcaatccaaatg 112  Q
    ||||||||||||||||||||||||| |||||||    
T  47727858 tctcaagtcaataccaccagatcaacccaaatg 47727826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 22760914 - 22760860
Alignment:
Q  65 gagcacactctcaggtctcaagtcaataccaccagatcaatccaaatgagttaat 119  Q
    |||||||||| |||||| |||||||||||||||||| ||| |||| || ||||||    
T  22760914 gagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggttaat 22760860  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 5499432 - 5499466
Alignment:
Q  65 gagcacactctcaggtctcaagtcaataccaccag 99  Q
    |||||||||||||| ||||||||||||||||||||    
T  5499432 gagcacactctcagatctcaagtcaataccaccag 5499466  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 26411601 - 26411551
Alignment:
Q  60 agaatgagcacactctcaggtctcaagtcaataccaccagatcaatccaaa 110  Q
    |||| ||||||||||||||||| |||||||||| ||||||| |||| ||||    
T  26411601 agaaggagcacactctcaggtcccaagtcaatatcaccagaccaattcaaa 26411551  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 19154724 - 19154654
Alignment:
Q  21 caaattgacatcgaagagaatcaaacttgagactttttaagaatgagcacactctcaggtctcaagtcaatac 93  Q
    |||||||||||| ||||||||| ||| |||||| |||  || | ||||||||||||||| |||||| ||||||    
T  19154724 caaattgacatcaaagagaatcgaacctgagaccttt--aggaggagcacactctcaggcctcaagccaatac 19154654  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 4844536 - 4844584
Alignment:
Q  65 gagcacactctcaggtctcaagtcaataccaccagatcaatccaaatga 113  Q
    |||||||||| ||| || |||||||||||||||||| ||| ||||||||    
T  4844536 gagcacactcccagatcccaagtcaataccaccagaccaacccaaatga 4844584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 4870232 - 4870280
Alignment:
Q  65 gagcacactctcaggtctcaagtcaataccaccagatcaatccaaatga 113  Q
    |||||||||| ||| || |||||||||||||||||| ||| ||||||||    
T  4870232 gagcacactcccagatcccaagtcaataccaccagaccaacccaaatga 4870280  T

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Target: scaffold0517 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 7725 - 7795
Alignment:
Q  37 agaatcaaacttgagactttttaagaatgagcacactctcaggtctcaagtcaataccaccagatcaatccaa 109  Q
    |||||| |||||||||| ||  ||| | ||||||||| |||||||||||| ||||||||||||| ||| ||||    
T  7725 agaatcgaacttgagacctt--aaggaggagcacactttcaggtctcaagccaataccaccagaccaacccaa 7795  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 26395570 - 26395624
Alignment:
Q  38 gaatcaaacttgagactttttaagaatgagcacactctcaggtctcaagtcaatacc 94  Q
    |||||||||||||||| ||  ||||||||||||||||||| |||  |||||||||||    
T  26395570 gaatcaaacttgagacgtt--aagaatgagcacactctcatgtcctaagtcaatacc 26395624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 13469161 - 13469201
Alignment:
Q  65 gagcacactctcaggtctcaagtcaataccaccagatcaat 105  Q
    ||||||||||||| ||||||||| |||||||||||| ||||    
T  13469161 gagcacactctcatgtctcaagttaataccaccagaccaat 13469201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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