View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19825_low_7 (Length: 445)

Name: NF19825_low_7
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19825_low_7
NF19825_low_7
[»] chr1 (5 HSPs)
chr1 (16-275)||(28610789-28611048)
chr1 (119-258)||(28610664-28610803)
chr1 (334-411)||(28611122-28611199)
chr1 (155-231)||(25948576-25948652)
chr1 (209-273)||(28610526-28610590)
[»] chr8 (13 HSPs)
chr8 (47-249)||(34999708-34999910)
chr8 (47-249)||(6169081-6169283)
chr8 (47-249)||(6168853-6169055)
chr8 (41-249)||(34999936-35000144)
chr8 (47-249)||(6168625-6168827)
chr8 (41-240)||(35000401-35000600)
chr8 (38-252)||(6168160-6168374)
chr8 (77-274)||(35000595-35000792)
chr8 (41-204)||(6167935-6168098)
chr8 (41-249)||(35000164-35000372)
chr8 (41-252)||(6168391-6168602)
chr8 (119-274)||(33775044-33775199)
chr8 (77-274)||(6167743-6167940)
[»] chr4 (34 HSPs)
chr4 (41-228)||(31287578-31287765)
chr4 (47-249)||(35100495-35100697)
chr4 (47-249)||(35108887-35109089)
chr4 (47-249)||(36295011-36295213)
chr4 (47-249)||(36295239-36295441)
chr4 (47-249)||(35109115-35109317)
chr4 (41-274)||(31287304-31287537)
chr4 (41-273)||(31286849-31287081)
chr4 (41-255)||(31288007-31288221)
chr4 (41-273)||(31259570-31259802)
chr4 (41-252)||(36294549-36294760)
chr4 (41-169)||(31287865-31287993)
chr4 (41-249)||(35109799-35110007)
chr4 (41-249)||(35110027-35110235)
chr4 (41-249)||(35110255-35110463)
chr4 (41-249)||(35110483-35110691)
chr4 (41-249)||(35110711-35110919)
chr4 (83-270)||(31260029-31260216)
chr4 (38-249)||(36294318-36294529)
chr4 (107-255)||(31260500-31260648)
chr4 (38-258)||(35109334-35109554)
chr4 (41-249)||(35109571-35109779)
chr4 (41-252)||(35110936-35111147)
chr4 (41-150)||(31306349-31306458)
chr4 (46-255)||(31306472-31306681)
chr4 (116-249)||(35100723-35100856)
chr4 (107-255)||(31260272-31260420)
chr4 (41-169)||(31287181-31287309)
chr4 (41-204)||(36294093-36294256)
chr4 (47-273)||(31259798-31260024)
chr4 (77-274)||(36293901-36294098)
chr4 (41-210)||(36294777-36294946)
chr4 (46-274)||(35111142-35111370)
chr4 (46-168)||(31288322-31288444)
[»] chr6 (3 HSPs)
chr6 (47-249)||(24039767-24039969)
chr6 (41-258)||(24039534-24039750)
chr6 (41-249)||(24039306-24039514)
[»] chr7 (4 HSPs)
chr7 (77-249)||(47990108-47990280)
chr7 (41-252)||(47989844-47990055)
chr7 (152-270)||(42609451-42609569)
chr7 (46-147)||(47989621-47989722)
[»] scaffold0971 (1 HSPs)
scaffold0971 (155-207)||(115-167)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 28610789 - 28611048
Alignment:
Q  16 gcttcatctagttctgaggttgcgcggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610789 gcttcatctagttctgaggttgcgcggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactatt 28610888  T
Q  116 gataacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |    
T  28610889 gataacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattgatctttgctggaaaacaacttgaggatgggaggactctcg 28610988  T
Q  216 ctgattataatattcagaaagagtctacgcttcatctggttctcaggctccgtggtggtg 275  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  28610989 ctgattataatattcagaaagagtctacgcttcatcttgttctcaggctacgtggtggtg 28611048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 258
Target Start/End: Original strand, 28610664 - 28610803
Alignment:
Q  119 aacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctg 218  Q
    ||||||||||| |||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||||| ||  | || |||||||| |||||||| |    
T  28610664 aacgtgaaggcgaagattcaagacaaggaaggcattccaccggatcagcaacgattgatctttgcagggaagcagttggaagatggaagaactcttgcgg 28610763  T
Q  219 attataatattcagaaagagtctacgcttcatctggttct 258  Q
    |||||||||| |||||||||  |||||||||||| |||||    
T  28610764 attataatatccagaaagagagtacgcttcatctagttct 28610803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 334 - 411
Target Start/End: Original strand, 28611122 - 28611199
Alignment:
Q  334 tgttctgctgcaatgattaaaagttgattaataaaagtttcaatttgatattatcgtttagatttgggatattgtctt 411  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||  |||||||||||    
T  28611122 tgttctgttgcaatgattaaaagttcattaataaaagtttcaatttgatattattgtttaaatttatgatattgtctt 28611199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 25948576 - 25948652
Alignment:
Q  155 ccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattca 231  Q
    ||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||| || || |||||||| || |||||    
T  25948576 ccaccggatcagcagcgtttgatttttgctggaaaacagcttgaagatggaagaaccctagctgattacaacattca 25948652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 28610526 - 28610590
Alignment:
Q  209 actcttgctgattataatattcagaaagagtctacgcttcatctggttctcaggctccgtggtgg 273  Q
    |||||||| ||||| ||||| ||||||||||| |||||||| || |||||| | |||||||||||    
T  28610526 actcttgcggattacaatatccagaaagagtccacgcttcaccttgttctccgtctccgtggtgg 28610590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 34999910 - 34999708
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| ||||||||||| |||||||| ||||| ||||| |||||||| || ||||| || || ||||||||||| ||||| || || ||||| ||||    
T  34999910 atgcagatctttgtgaagacattgaccggaaagaccattaccctagaggtagaaagttcagacacaattgataacgtaaaggcaaaaatacaggacaagg 34999811  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    |||| || ||||| ||||||||| | ||||||||||||||||| ||  | |||||||||||||| |||||||| || || |||||||| |||||||| ||    
T  34999810 agggaatcccaccagatcagcagaggttgatctttgctgggaagcagttagaggatggaaggacccttgctgactacaacattcagaaggagtctacact 34999711  T
Q  247 tca 249  Q
    |||    
T  34999710 tca 34999708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 6169081 - 6169283
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| ||||| |||||||||||||| ||||| || ||  ||||||| || ||||| || || |||||||| |||||||| || || ||||| ||||    
T  6169081 atgcagatctttgtaaagacgttgaccggtaagaccatcaccttagaggtagaaagttcagacacaattgataatgtgaaggcaaaaatccaggacaagg 6169180  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    | || || ||||| ||||||||| | ||||||||||||||||| ||| | |||||||||||||| |||||||| || || |||||||| |||||||| ||    
T  6169181 aaggaatcccaccagatcagcagaggttgatctttgctgggaagcaattggaggatggaaggacccttgctgactacaacattcagaaggagtctactct 6169280  T
Q  247 tca 249  Q
    |||    
T  6169281 tca 6169283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 6168853 - 6169055
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| |||||||||||||||||||| ||||| || ||  ||||||| || ||||| || || |||||||| |||||||| || || ||||| ||||    
T  6168853 atgcagatctttgtgaagacgttgaccggtaagaccatcaccttagaggtagaaagttcagacacaattgataatgtgaaggcaaaaatccaggacaagg 6168952  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    | || || ||||| ||||||||| | ||||||||||||||||| || ||||| |||||  ||||| | |||||||| || |||||||||||||| || ||    
T  6168953 aaggaatcccaccagatcagcagaggttgatctttgctgggaagcagcttgaagatggccggactttggctgattacaacattcagaaagagtccaccct 6169052  T
Q  247 tca 249  Q
    |||    
T  6169053 tca 6169055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 35000144 - 34999936
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| || ||||||||  | || || || ||||||||| | ||||| ||||| || || |||||||| || |||||||| || |||||||    
T  35000144 ggtggtatgcagattttcgtgaagactcttactggcaaaacaattactttggaggtagagagctcagacactattgacaatgtgaaggctaaaattcagg 35000045  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | |||||||||||||| || || ||||| |||||||| |||||||| || || || || |||||  |||||||||||||||| || ||||||||||||||    
T  35000044 acaaggagggcattcccccagaccagcaacgattgatttttgctggaaagcagctcgaagatggccggactcttgctgattacaacattcagaaagagtc 34999945  T
Q  241 tacgcttca 249  Q
    ||| |||||    
T  34999944 tacccttca 34999936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 6168625 - 6168827
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| ||||||||||| ||||| || ||||| |||||  | |||||||| || || || || || ||||| || ||||| || || ||||||||||    
T  6168625 atgcagatctttgtgaagactttgacaggaaagaccattacattggaggtggaaagctcagacaccatcgataatgttaaggcaaaaatacaggataagg 6168724  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    |||| |||||||| ||||||||| | ||||||||||||||||| || ||||| |||||  ||||| | |||||||| || |||||||||||||| || ||    
T  6168725 agggaattccacctgatcagcagaggttgatctttgctgggaagcagcttgaagatggccggactttggctgattacaacattcagaaagagtccaccct 6168824  T
Q  247 tca 249  Q
    |||    
T  6168825 tca 6168827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 35000600 - 35000401
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| ||||| ||||||||||||||  | || || ||||||||||| || ||||||||||| ||||| || ||||| || || ||||||||||| || |    
T  35000600 ggtggtatgcaaatatttgtgaagactctcacaggaaagacaattacccttgaggtggagagctctgacaccattgacaatgtcaaggccaagatacaag 35000501  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | || ||||| || ||||| ||||||||| |  | ||||||||||| ||||| ||||| ||||| || ||  | ||||||||||| ||||||||||||||    
T  35000500 acaaagagggtatcccaccagatcagcagaggctcatctttgctggaaaacagcttgaagatggcagaaccttggctgattataacattcagaaagagtc 35000401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 252
Target Start/End: Original strand, 6168160 - 6168374
Alignment:
Q  38 cgcggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattc 137  Q
    |||||||| |||||||| ||||| |||||  | || || ||||| |||||| | ||||| ||||| || || || ||||| || |||||||||||||| |    
T  6168160 cgcggtggtatgcagatttttgttaagacccttacaggaaagactattactttggaggtagagagctcggacacaattgacaatgtgaaggccaagatac 6168259  T
Q  138 aggataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaaga 237  Q
    | || |||||||| || || || || |||||  | ||||| |||||||| || |||||||| |||||  | ||||| ||||||||||| || ||||||||    
T  6168260 aagacaaggagggtatccccccagaccagcaaaggttgatttttgctggaaagcaacttgaagatggtcgaactctagctgattataacatccagaaaga 6168359  T
Q  238 gtctacgcttcatct 252  Q
    ||| || ||||||||    
T  6168360 gtcgactcttcatct 6168374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 274
Target Start/End: Complemental strand, 35000792 - 35000595
Alignment:
Q  77 aagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattga 176  Q
    ||||| || ||||| || || |||||||| ||||| || || || || |||||||||||||| || ||||| || || ||||| |||||||||||  | |    
T  35000792 aagaccatcactctcgaagttgagagttcagataccatagacaatgttaaggccaagattcaagacaaggaagggatcccacctgatcagcagcgtctca 35000693  T
Q  177 tctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgcttcatctggttctcaggctccgtggtggt 274  Q
    | |||||||| |||||||| ||||||||  | || ||||| |||||||| || || || |||||||| |||||| |||| ||| | ||||||||||||    
T  35000692 tttttgctggcaaacaactggaggatgggcgtacccttgcggattataacatccaaaaggagtctacccttcatttggtgctccgtctccgtggtggt 35000595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 6167935 - 6168098
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| ||||| ||||||||||||||  | || || ||||| ||||| || ||||||||||| |||||||| ||||| || || ||||||||||| || |    
T  6167935 ggtggtatgcaaatatttgtgaagactctcactggaaagacgattacccttgaggtggagagctctgataccattgacaatgttaaggccaagatacaag 6168034  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatgg 204  Q
    | || ||||| || ||||| || |||||| |  | ||||||||||| ||||| ||||| |||||    
T  6168035 acaaagagggtatcccaccagaccagcagaggctcatctttgctggaaaacagcttgaagatgg 6168098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 35000372 - 35000164
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| |||||||||||  | || || |||||||||||| | ||||| ||||| || || || ||||| || |||||||| ||||| ||||    
T  35000372 ggtggtatgcagatttttgtgaagacccttacaggaaagacaattactttggaggtagagagctcggacacaattgacaatgtgaaggctaagatacagg 35000273  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | || ||||| || || || || |||||| |  | || |||||||| || || || || ||||| || |||||||||||||| || || |||||||||||    
T  35000272 acaaagagggtatccccccagaccagcagaggctcatttttgctggaaagcagctcgaagatggcagaactcttgctgattacaacatccagaaagagtc 35000173  T
Q  241 tacgcttca 249  Q
     || |||||    
T  35000172 aactcttca 35000164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 252
Target Start/End: Original strand, 6168391 - 6168602
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| ||||| |||||  | || || || || |||||| | ||||||||||| || || || ||||| || || ||||| ||||||||||    
T  6168391 ggtggtatgcagatttttgttaagaccctaactggaaaaacgattactttggaggtggagagctcagacacaattgacaatgtaaaggctaagattcagg 6168490  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | ||||| |||||||| || || |||||  | ||||| |||||||| || || ||||| ||||| || ||  | || |||||||| || |||||||| ||    
T  6168491 acaaggaaggcattcccccagaccagcaaaggttgatttttgctggaaagcagcttgaagatggcagaaccttggcagattataacatccagaaagaatc 6168590  T
Q  241 tacgcttcatct 252  Q
     || ||||||||    
T  6168591 cactcttcatct 6168602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 274
Target Start/End: Original strand, 33775044 - 33775199
Alignment:
Q  119 aacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctg 218  Q
    ||||| || |||||||| ||||||||||| || ||||| | ||| |||||| | |||||||| || || || || || ||||| ||  | || |||||||    
T  33775044 aacgtcaaagccaagatccaggataaggaaggaattcccctggaccagcagaggttgatcttcgccggaaagcagctcgaggacggccgcacccttgctg 33775143  T
Q  219 attataatattcagaaagagtctacgcttcatctggttctcaggctccgtggtggt 274  Q
    |||| || || ||||| |||||||| |||||||| || ||| | || |||||||||    
T  33775144 attacaacatccagaaggagtctacccttcatcttgtcctccgtctacgtggtggt 33775199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 6167743 - 6167940
Alignment:
Q  77 aagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattga 176  Q
    ||||| || ||||| || || |||||||| ||||| || || || || ||||| || ||||| || ||||| || || ||||| || ||||||||| |||    
T  6167743 aagaccatcactctcgaagttgagagttcagataccatagacaatgttaaggcaaaaattcaagacaaggaaggaatcccaccagaccagcagcgactga 6167842  T
Q  177 tctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgcttcatctggttctcaggctccgtggtggt 274  Q
    | |||||||| || || || ||||||||  | || |||||||||||||| || || || || || || || ||| |||| ||| | ||||||||||||    
T  6167843 tttttgctggcaagcagctggaggatgggcgtacccttgctgattataacatccaaaaggaatccactctccatttggtgctccgtctccgtggtggt 6167940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 31287765 - 31287578
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| ||||| || ||||| |||||  | ||||| || || |||||| | ||||| |||||||| |||||||||||||| ||||| || ||||||||||    
T  31287765 ggtggtatgcaaatttttgtaaagacccttaccggaaaaactattactttggaggttgagagttcagatactattgataatgtgaaagctaagattcagg 31287666  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatat 228  Q
    ||||||| ||||| || || ||||||||| || | |||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  31287665 ataaggaaggcatccctcctgatcagcagagacttatctttgcagggaaacaacttgaagatggaaggacccttgctgattataatat 31287578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 35100697 - 35100495
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| |||||||||||||||||||| ||||| || ||  ||||||| || ||||| || || |||||||| |||||||| || || ||||| ||||    
T  35100697 atgcagatctttgtgaagacgttgaccggtaagaccatcaccttagaggtagaaagttcagacacaattgataatgtgaaggcaaaaatccaggacaagg 35100598  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    | || || ||||| ||||||||| | ||||||||||||||||| ||| | |||||||||||||| |||||||| || || |||||||| |||||||| ||    
T  35100597 aaggaatcccaccagatcagcagaggttgatctttgctgggaagcaattggaggatggaaggacccttgctgactacaacattcagaaggagtctactct 35100498  T
Q  247 tca 249  Q
    |||    
T  35100497 tca 35100495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 35109089 - 35108887
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| |||||||||||||||||||| ||||| || ||  ||||||| || ||||| || || |||||||| |||||||| || || ||||| ||||    
T  35109089 atgcagatctttgtgaagacgttgaccggtaagaccatcaccttagaggtagaaagttcagacacaattgataatgtgaaggcaaaaatccaggacaagg 35108990  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    | || || ||||| ||||||||| | ||||||||||||||||| ||| | |||||||||||||| |||||||| || || |||||||| |||||||| ||    
T  35108989 aaggaatcccaccagatcagcagaggttgatctttgctgggaagcaattggaggatggaaggacccttgctgactacaacattcagaaggagtctactct 35108890  T
Q  247 tca 249  Q
    |||    
T  35108889 tca 35108887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 36295011 - 36295213
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| ||||||||||| ||||| || ||||| |||||  | |||||||| || ||||| || |||||||| || ||||| || || ||||||||||    
T  36295011 atgcagatctttgtgaagactttgacaggaaagaccattacattggaggtggaaagctctgacaccattgataatgttaaggctaaaatacaggataagg 36295110  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    |||| || ||||| ||||||||| | ||||||||||||||||| || ||||| |||||  ||||| | ||||||||||| |||||||||||||| || ||    
T  36295111 agggaatcccaccagatcagcagaggttgatctttgctgggaagcagcttgaagatggccggactttggctgattataacattcagaaagagtccaccct 36295210  T
Q  247 tca 249  Q
    |||    
T  36295211 tca 36295213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 36295239 - 36295441
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| ||||||||||| |||||||| ||||| || ||  |||||||||| ||||| || ||||| ||||| || ||||| || || ||||| ||||    
T  36295239 atgcagatctttgtgaagacattgaccggaaagaccatcaccttagaggtggaaagttcagacactatcgataatgtcaaggcaaaaatccaggacaagg 36295338  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    |||| || || || ||||||||| | ||||||||||||||||| ||| | |||||||||||||| |||||||| || || |||||||| |||||||| ||    
T  36295339 agggaatccccccagatcagcagaggttgatctttgctgggaagcaattggaggatggaaggacccttgctgactacaacattcagaaggagtctactct 36295438  T
Q  247 tca 249  Q
    |||    
T  36295439 tca 36295441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 35109317 - 35109115
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| ||||||||||| ||||| || ||||| |||||  | |||||||| || || || || |||||||| || ||||| || || ||||||||||    
T  35109317 atgcagatctttgtgaagactttgacaggaaagaccattacattggaggtggaaagctcagacaccattgataatgttaaggcaaaaatacaggataagg 35109218  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    |||| || ||||| ||||||||| | ||||||||||||||||| || ||||| |||||  ||||| | || ||||| || ||||||||||||||||| ||    
T  35109217 agggaatcccacctgatcagcagaggttgatctttgctgggaagcagcttgaagatggccggactttggccgattacaacattcagaaagagtctaccct 35109118  T
Q  247 tca 249  Q
    |||    
T  35109117 tca 35109115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 274
Target Start/End: Complemental strand, 31287537 - 31287304
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| ||||| || ||||| |||||  | ||||| || || |||||| | ||||| |||||||| |||||||||||||| ||||| || |||||||| |    
T  31287537 ggtggtatgcaaatttttgtaaagacccttaccggaaaaactattactttggaggttgagagttcagatactattgataatgtgaaagctaagattcaag 31287438  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    |||||||||| || || || ||||||||| |  | ||||||||||| || || ||||| ||||||||||| |||||||||||||| ||||| || || ||    
T  31287437 ataaggagggtatccctcccgatcagcagaggcttatctttgctggtaagcagcttgaagatggaaggacccttgctgattataacattcaaaaggaatc 31287338  T
Q  241 tacgcttcatctggttctcaggctccgtggtggt 274  Q
     || || ||| ||||| | ||||| |||||||||    
T  31287337 gaccctccatttggttttgaggcttcgtggtggt 31287304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 31287081 - 31286849
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||||||||| ||||||||||||||  | ||||||||||| |||||  | |||||||| || |||||||| |||||||||||||| || ||||| ||||    
T  31287081 ggtgggatgcaaatatttgtgaagactcttaccgggaagactattaccttggaggtggaaagctctgatacgattgataacgtgaaagcgaagatacagg 31286982  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    |||||||||| |||||||| || |||||  |  | || |||||||| || ||  | ||||||||  | ||| | || ||||| |||||||||||||| ||    
T  31286981 ataaggagggtattccaccagaccagcaaaggcttatttttgctggcaagcagttggaggatggtcgtactttggcagattacaatattcagaaagaatc 31286882  T
Q  241 tacgcttcatctggttctcaggctccgtggtgg 273  Q
    ||| || ||||| |||||  | |||||||||||    
T  31286881 taccctgcatcttgttcttcgcctccgtggtgg 31286849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 255
Target Start/End: Complemental strand, 31288221 - 31288007
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||||||||||||||| |||||||| || ||||| || || ||||| ||    |||||||| |||||||| || ||||||||||| || |    
T  31288221 ggtggcatgcagatatttgtgaagacattgaccggaaaaacaatcacccttgaggttgaatcatctgatacaattgataatgtcaaggccaagatccaag 31288122  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | || ||||| || || || ||||||||| |  | |||||||| |||||||| || ||||||||||| || || ||||||||||| || ||||| || ||    
T  31288121 acaaagagggtatccctcctgatcagcagaggcttatctttgcagggaaacagctcgaggatggaagaaccctagctgattataacatccagaaggaatc 31288022  T
Q  241 tacgcttcatctggt 255  Q
    ||| |||||||||||    
T  31288021 tacccttcatctggt 31288007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 31259802 - 31259570
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| ||||| ||||||||||||||  | || |||||||| |||||  | |||||||| || ||||||||||||||||| ||||| || ||||| || |    
T  31259802 ggtggcatgcaaatatttgtgaagacacttactgggaagactattaccttggaggtggaaagctctgatactattgataatgtgaaagcaaagatacaag 31259703  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    |||||||||| ||||| || ||||||||| |  | || |||||||| || ||  | ||||||||  | ||||| || ||||| |||||||||||||| ||    
T  31259702 ataaggagggtattcccccagatcagcagaggcttatttttgctggcaagcagttggaggatggtcgtactctggcagattacaatattcagaaagaatc 31259603  T
Q  241 tacgcttcatctggttctcaggctccgtggtgg 273  Q
    ||| || ||||| |||||  | |||||||||||    
T  31259602 taccctgcatcttgttcttcgtctccgtggtgg 31259570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 252
Target Start/End: Original strand, 36294549 - 36294760
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| |||||||||||  | || || |||||||||||| | ||||| ||||| || || || ||||| || |||||||||||||| || |    
T  36294549 ggtggtatgcagatttttgtgaagactcttactggcaagacaattactttggaggtagagagctcggacacaattgacaatgtgaaggccaagatacaag 36294648  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | |||||||| ||||| || || |||||  | ||||| |||||||| || |||||||| || ||  | ||||| |||||||||||||| |||||||||||    
T  36294649 acaaggagggtattcccccagaccagcaaaggttgatttttgctggaaagcaacttgaagacggtcgaactctggctgattataatatccagaaagagtc 36294748  T
Q  241 tacgcttcatct 252  Q
     || ||||||||    
T  36294749 gactcttcatct 36294760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 31287993 - 31287865
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| ||||| ||||| ||||| || ||||| |||||| | |||||||||||||| |||||||||||||| ||||| || |||||||| |    
T  31287993 ggtggaatgcagatttttgtaaagactttgactggaaagactattactttggaggtggagagttcagatactattgataatgtgaaagctaagattcaag 31287894  T
Q  141 ataaggagggcattccaccggatcagcag 169  Q
    |||||||||| || || || |||||||||    
T  31287893 ataaggagggtatccctccagatcagcag 31287865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 35110007 - 35109799
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| ||||| |||||  | || || |||||||||||| | ||||| ||||| || || || ||||| || || ||||| ||||||||||    
T  35110007 ggtggtatgcagatttttgtaaagacccttacaggaaagacaattactttggaggttgagagctcggacacgattgacaatgtaaaggctaagattcagg 35109908  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | |||||||||||||| || || |||||| |  | || |||||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||||||    
T  35109907 acaaggagggcattcccccagaccagcagaggctcatttttgctggaaaacagcttgaagatggcagaactcttgctgattacaacatccagaaagagtc 35109808  T
Q  241 tacgcttca 249  Q
     || |||||    
T  35109807 aactcttca 35109799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 35110235 - 35110027
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| ||||| |||||  | || || |||||||||||| | ||||| ||||| || || || ||||| || || ||||| ||||||||||    
T  35110235 ggtggtatgcagatttttgtaaagacccttacaggaaagacaattactttggaggttgagagctcggacacgattgacaatgtaaaggctaagattcagg 35110136  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | |||||||||||||| || || |||||| |  | || |||||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||||||    
T  35110135 acaaggagggcattcccccagaccagcagaggctcatttttgctggaaaacagcttgaagatggcagaactcttgctgattacaacatccagaaagagtc 35110036  T
Q  241 tacgcttca 249  Q
     || |||||    
T  35110035 aactcttca 35110027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 35110463 - 35110255
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| ||||| |||||  | || || |||||||||||| | ||||| ||||| || || || ||||| || || ||||| ||||||||||    
T  35110463 ggtggtatgcagatttttgtaaagacccttacaggaaagacaattactttggaggttgagagctcggacacgattgacaatgtaaaggctaagattcagg 35110364  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | |||||||||||||| || || |||||| |  | || |||||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||||||    
T  35110363 acaaggagggcattcccccagaccagcagaggctcatttttgctggaaaacagcttgaagatggcagaactcttgctgattacaacatccagaaagagtc 35110264  T
Q  241 tacgcttca 249  Q
     || |||||    
T  35110263 aactcttca 35110255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 35110691 - 35110483
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| ||||| |||||  | || || |||||||||||| | ||||| ||||| || || || ||||| || || ||||| ||||||||||    
T  35110691 ggtggtatgcagatttttgtaaagacccttacaggaaagacaattactttggaggttgagagctcggacacgattgacaatgtaaaggctaagattcagg 35110592  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | |||||||||||||| || || |||||| |  | || |||||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||||||    
T  35110591 acaaggagggcattcccccagaccagcagaggctcatttttgctggaaaacagcttgaagatggcagaactcttgctgattacaacatccagaaagagtc 35110492  T
Q  241 tacgcttca 249  Q
     || |||||    
T  35110491 aactcttca 35110483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 35110919 - 35110711
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| ||||| |||||  | || || |||||||||||| | ||||| ||||| || || || ||||| || || ||||| ||||||||||    
T  35110919 ggtggtatgcagatttttgtaaagacccttacaggaaagacaattactttggaggtagagagctcggacacgattgacaatgtaaaggctaagattcagg 35110820  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | |||||||||||||| || || |||||| |  | || |||||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||||||    
T  35110819 acaaggagggcattcccccagaccagcagaggctcatttttgctggaaaacagcttgaagatggcagaactcttgctgattacaacatccagaaagagtc 35110720  T
Q  241 tacgcttca 249  Q
     || |||||    
T  35110719 aactcttca 35110711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 83 - 270
Target Start/End: Complemental strand, 31260216 - 31260029
Alignment:
Q  83 attactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattgatctttg 182  Q
    |||||| | ||||| |||||||| |||||||||||||| ||||| || |||||||| ||||||||||| || || || ||||| ||| |  | |||||||    
T  31260216 attactttggaggttgagagttcagatactattgataatgtgaaagctaagattcaagataaggagggtatccctcctgatcaacagaggcttatctttg 31260117  T
Q  183 ctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgcttcatctggttctcaggctccgtgg 270  Q
    |||| || || ||||| ||||||||||| ||||| |||||||| || ||||| ||||| || || ||| ||||| | ||||| |||||    
T  31260116 ctggtaagcagcttgaagatggaaggacacttgccgattataacatccagaaggagtccactctccatttggttttgaggcttcgtgg 31260029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 38 - 249
Target Start/End: Original strand, 36294318 - 36294529
Alignment:
Q  38 cgcggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattc 137  Q
    |||||||| |||||||| ||||| |||||  | || || |||||||||||| | ||||| ||||| || ||||| ||||| || || ||||| |||||||    
T  36294318 cgcggtggtatgcagatttttgtaaagacccttacaggaaagacaattactttggaggtagagagctcagatacgattgacaatgtaaaggcaaagattc 36294417  T
Q  138 aggataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaaga 237  Q
    |||| || ||||| ||||| || ||||||||| |  | || |||||||| || || ||||| ||||| || |||||||||||||| || || ||||||||    
T  36294418 aggacaaagagggtattcccccagatcagcagaggctcatttttgctggaaagcagcttgaagatggcagaactcttgctgattacaacatccagaaaga 36294517  T
Q  238 gtctacgcttca 249  Q
    ||| || |||||    
T  36294518 gtcaactcttca 36294529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 31260648 - 31260500
Alignment:
Q  107 gatactattgataacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaa 206  Q
    ||||| |||||||| || |||||||||||||| || || ||||| || || || ||||||||| |  | |||||||||||||||||||| ||||||||||    
T  31260648 gatacaattgataatgtcaaggccaagattcaagacaaagagggaatccctcctgatcagcagaggcttatctttgctgggaaacaactcgaggatggaa 31260549  T
Q  207 ggactcttgctgattataatattcagaaagagtctacgcttcatctggt 255  Q
    | || || ||||||||||| || ||||| || ||||| |||||| ||||    
T  31260548 gaaccctagctgattataacatccagaaggaatctacccttcatttggt 31260500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 35109554 - 35109334
Alignment:
Q  38 cgcggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattc 137  Q
    |||||||| |||||||| ||||| |||||  | || || || ||||||||| | ||||| ||||| || || ||||||||||| || ||||||||||| |    
T  35109554 cgcggtggtatgcagatttttgttaagacactcacaggcaaaacaattactttggaggtagagagctcggacactattgataatgtcaaggccaagatac 35109455  T
Q  138 aggataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaaga 237  Q
    |||| |||||||| || || || || |||||  | ||||| |||||||| || || ||||| ||||| |||||  | ||||||||||| |||||||| ||    
T  35109454 aggacaaggagggtatccccccagaccagcaaaggttgatttttgctggaaagcagcttgaagatggcaggacattggctgattataacattcagaagga 35109355  T
Q  238 gtctacgcttcatctggttct 258  Q
     || || |||||||| |||||    
T  35109354 atcaacccttcatcttgttct 35109334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 35109779 - 35109571
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| ||||| |||||  | || || |||||||||||| | ||||| ||||| || || || ||||| || || ||||| ||||||||||    
T  35109779 ggtggtatgcagatttttgtaaagacccttacaggaaagacaattactttggaggttgagagctcggacacgattgacaatgtaaaggctaagattcagg 35109680  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | |||||||||||||| || || |||||| |  | || |||||||| || || ||||| ||||| || |||||||||||||| || || |||||||||||    
T  35109679 acaaggagggcattcccccagaccagcagaggctcatttttgctggaaagcagcttgaagatggcagaactcttgctgattacaacatccagaaagagtc 35109580  T
Q  241 tacgcttca 249  Q
     || |||||    
T  35109579 gactcttca 35109571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 252
Target Start/End: Complemental strand, 35111147 - 35110936
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| ||||| ||||||||||||||  | || || |||||||| || || ||||||||||| |||||||| ||||| || || ||||||||||| || |    
T  35111147 ggtggtatgcaaatatttgtgaagactctcactggaaagacaatcacccttgaggtggagagctctgataccattgacaatgttaaggccaagatacaag 35111048  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | || ||||| || ||||| || |||||| |  | ||||||||||| ||||| ||||| ||||| || ||  | || |||||||| || |||||||||||    
T  35111047 acaaagagggtatcccaccagaccagcagaggctcatctttgctggaaaacagcttgaagatggcagaacattggccgattataacatccagaaagagtc 35110948  T
Q  241 tacgcttcatct 252  Q
     || ||||||||    
T  35110947 aactcttcatct 35110936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 31306458 - 31306349
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||||||||| ||||| ||||| || ||||| |||||| | ||||| |||||||| |||||||||||||| ||||| || |||||||| |    
T  31306458 ggtggaatgcagatatttgttaagactttgactggaaagactattactttggaggttgagagttcagatactattgataatgtgaaagctaagattcaag 31306359  T
Q  141 ataaggaggg 150  Q
    | ||||||||    
T  31306358 acaaggaggg 31306349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 31306681 - 31306472
Alignment:
Q  46 gatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataag 145  Q
    ||||||||| |||||||| || ||||| || || || || ||||| ||||| |||||||| ||||| |||||||| || ||||||||||| || || ||     
T  31306681 gatgcagatctttgtgaaaacattgacaggaaaaaccatcactcttgaggtagagagttccgatacaattgataatgtcaaggccaagatccaagacaaa 31306582  T
Q  146 gagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgc 245  Q
    ||||| || || || ||||||||| |  | |||||||| || ||||| || ||||||||||| |  || ||||||||||| || ||||| || ||||| |    
T  31306581 gagggtatccctcctgatcagcagaggcttatctttgcaggtaaacagctcgaggatggaagaatcctagctgattataacatccagaaggaatctaccc 31306482  T
Q  246 ttcatctggt 255  Q
    ||||| ||||    
T  31306481 ttcatttggt 31306472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 249
Target Start/End: Complemental strand, 35100856 - 35100723
Alignment:
Q  116 gataacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttg 215  Q
    ||||| || ||||| || || |||||||||||||| || ||||| ||||||||| | ||||||||||||||||| || ||||| |||||  ||||| | |    
T  35100856 gataatgttaaggcaaaaatacaggataaggagggaatcccacctgatcagcagaggttgatctttgctgggaagcagcttgaagatggccggactttgg 35100757  T
Q  216 ctgattataatattcagaaagagtctacgcttca 249  Q
    | ||||| || ||||||||||||||||| |||||    
T  35100756 ccgattacaacattcagaaagagtctacccttca 35100723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 31260420 - 31260272
Alignment:
Q  107 gatactattgataacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaa 206  Q
    ||||| |||||||| || ||||||||||| ||||| || ||||| || || || ||||||||| |  | |||||||| ||||||||||| || |||||||    
T  31260420 gataccattgataatgtcaaggccaagatacaggacaaagagggtatccctcctgatcagcagaggcttatctttgcagggaaacaactagaagatggaa 31260321  T
Q  207 ggactcttgctgattataatattcagaaagagtctacgcttcatctggt 255  Q
    |||| || ||||||||||| || ||||| || ||||| |||||| ||||    
T  31260320 ggaccctagctgattataacatccagaaggaatctacccttcatttggt 31260272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 31287309 - 31287181
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| |||||||||||  | ||||| |||||||| ||| | ||||| || ||||||||||| ||||| |||||||| || ||||||||||    
T  31287309 ggtggtatgcagatttttgtgaagactcttaccggaaagacaataactttggaggttgaaagttctgatacaattgacaacgtgaaagcaaagattcagg 31287210  T
Q  141 ataaggagggcattccaccggatcagcag 169  Q
    | || ||||||||||| || || ||||||    
T  31287209 acaaagagggcattcctccagaccagcag 31287181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 36294093 - 36294256
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| ||||| ||||||||||||||  | || || |||||||| || || ||||||||||| |||||||| ||||| || || ||||||||||| ||||    
T  36294093 ggtggtatgcaaatatttgtgaagactctcactggaaagacaatcacccttgaggtggagagctctgataccattgacaatgttaaggccaagatacagg 36294192  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatgg 204  Q
    | || || || |||||||| || |||||| |  | ||||||||||| ||||| ||||| |||||    
T  36294193 acaaagaaggtattccaccagaccagcagaggctcatctttgctggaaaacagcttgaagatgg 36294256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 273
Target Start/End: Complemental strand, 31260024 - 31259798
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| ||||| |||||  | || || ||||| || ||| | ||||| |||||||||||||| |||||||| |||||||| || ||||||||||| |    
T  31260024 atgcagatttttgttaagacccttactggaaagaccataactttggaggttgagagttctgatacaattgataatgtgaaggcaaaaattcaggataaag 31259925  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    |||||||||| || || |||||| || | || |||||||| || ||  | ||||||||  | ||| | || ||||||||||| ||||| || |||||  |    
T  31259924 agggcattcctcctgaccagcagagactaatttttgctggaaagcagttggaggatggtcgtactttggccgattataatatccagaaggaatctacttt 31259825  T
Q  247 tcatctggttctcaggctccgtggtgg 273  Q
     ||| ||||| | ||||| ||||||||    
T  31259824 gcatttggttttgaggcttcgtggtgg 31259798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 36293901 - 36294098
Alignment:
Q  77 aagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattga 176  Q
    ||||| || ||||| || || |||||||| ||||| || || || || ||||| |||||||| || ||||| || || ||||| || ||||||||  |||    
T  36293901 aagaccatcactctcgaagttgagagttcagataccatagacaatgttaaggcaaagattcaagacaaggaaggaatcccacctgaccagcagcgtctga 36294000  T
Q  177 tctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgcttcatctggttctcaggctccgtggtggt 274  Q
    | |||||||| || || || ||||||||  | || |||||||||||||| || ||||| ||||| || || ||| |||| ||| | ||||||||||||    
T  36294001 tttttgctggaaagcagctggaggatgggcgtacccttgctgattataacatccagaaggagtccaccctccatttggtgctccgtctccgtggtggt 36294098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 210
Target Start/End: Original strand, 36294777 - 36294946
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| ||||| |||||  | || || || || |||||| | ||||| ||||| || || || ||||| || || ||||| ||||||| ||    
T  36294777 ggtggtatgcagatttttgttaagaccctaactggaaaaacgattactttggaggttgagagctcagacacaattgacaatgtaaaggctaagattctgg 36294876  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggac 210  Q
    | |||||||||||||| || || |||||  | ||||| |||||||| || || ||||| |||||||||||    
T  36294877 acaaggagggcattcctccagaccagcaaaggttgatttttgctggaaagcagcttgaagatggaaggac 36294946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 274
Target Start/End: Complemental strand, 35111370 - 35111142
Alignment:
Q  46 gatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataag 145  Q
    |||||| || |||||||||||  | || || |||||||| || || ||||||||||| || ||||| ||||| || || |||||||||||||| || ||     
T  35111370 gatgcaaatctttgtgaagactctcacaggaaagacaatcacccttgaggtggagagctccgatacaattgacaatgttaaggccaagattcaagacaaa 35111271  T
Q  146 gagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgc 245  Q
    || || || || || || ||||||||  |||| |||||||| || || || |||||| |  | || |||||||||||||| || || || ||||| || |    
T  35111270 gaagggatccctccagaccagcagcgtctgatttttgctggcaagcagctggaggataggcgtacccttgctgattataacatccaaaaggagtccaccc 35111171  T
Q  246 ttcatctggttctcaggctccgtggtggt 274  Q
    | ||| |||| ||| | || |||||||||    
T  35111170 tccatttggtgctccgtcttcgtggtggt 35111142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 31288444 - 31288322
Alignment:
Q  46 gatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataag 145  Q
    |||||| || |||||||| || ||||| || || || || || || |||||||||||||||||||| || || ||||| || || |||||||| || |||    
T  31288444 gatgcaaatctttgtgaaaacattgactggcaaaactatcaccctcgaggtggagagttctgataccatagacaacgttaaagctaagattcaagacaag 31288345  T
Q  146 gagggcattccaccggatcagca 168  Q
    || || ||||| || ||||||||    
T  31288344 gaaggtattcctcccgatcagca 31288322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 24039767 - 24039969
Alignment:
Q  47 atgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataagg 146  Q
    |||||||| ||||||||||| ||||| || ||||| |||||  | |||||||| ||||| || || |||||||| || ||||| || || ||||| ||||    
T  24039767 atgcagatctttgtgaagactttgacaggaaagaccattacattggaggtggaaagttcagacaccattgataatgttaaggcaaaaatccaggacaagg 24039866  T
Q  147 agggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgct 246  Q
    | || || ||||| ||||| ||| | ||||||||||||||||| ||| | ||||||||||| || |||||||| || || ||||||||||||||||| ||    
T  24039867 aaggaatcccaccagatcaacagaggttgatctttgctgggaagcaattggaggatggaagaacccttgctgactacaacattcagaaagagtctactct 24039966  T
Q  247 tca 249  Q
    |||    
T  24039967 tca 24039969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 41 - 258
Target Start/End: Original strand, 24039534 - 24039750
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||| |||||||| |||||||||||  | ||||| || ||||||||| | ||||| ||||| || ||||||||||| || |||||||||||||| ||||    
T  24039534 ggtggtatgcagatttttgtgaagaccctcaccggaaaaacaattactttggaggtagagagctcagatactattgacaatgtgaaggccaagatacagg 24039633  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | |||||||| | ||| || || |||||  | ||||| || ||||| || || ||||| ||||| |||||  | |||||||||||||| ||||| || ||    
T  24039634 acaaggagggta-tcccccagaccagcaaaggttgattttcgctggaaagcagcttgaagatggcaggacattggctgattataatatccagaaggaatc 24039732  T
Q  241 tacgcttcatctggttct 258  Q
     || |||||||| |||||    
T  24039733 cacccttcatcttgttct 24039750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 249
Target Start/End: Original strand, 24039306 - 24039514
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||||||||| || || || |||||  | || || |||||||| || || ||||||||||| ||||||||||||||||| || || |||||||||||||    
T  24039306 ggtgggatgcaaatcttcgtcaagactctcactggaaagacaatcacccttgaggtggagagctctgatactattgataatgtcaaagccaagattcagg 24039405  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | |||||||| || || || || |||||| |  | || |||||||| || || ||||| ||||| || |||||||| ||||| || || || ||||||||    
T  24039406 acaaggagggtatccccccagaccagcagaggctcatttttgctggaaagcagcttgaagatggcagaactcttgccgattacaacatccaaaaagagtc 24039505  T
Q  241 tacgcttca 249  Q
     || |||||    
T  24039506 aactcttca 24039514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 47990108 - 47990280
Alignment:
Q  77 aagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataaggagggcattccaccggatcagcagcgattga 176  Q
    |||||||||||| | ||||| ||||| || || || ||||| || || ||||| || || ||||| |||||||| || ||||| ||||||||| | ||||    
T  47990108 aagacaattactttggaggtagagagctcggacacgattgacaatgtaaaggctaaaatacaggacaaggagggaatcccaccagatcagcagaggttga 47990207  T
Q  177 tctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgcttca 249  Q
    ||||||||||||| ||| | |||||||||||||| |||||||| || || |||||||| |||||||| |||||    
T  47990208 tctttgctgggaagcaattggaggatggaaggacccttgctgactacaacattcagaaggagtctactcttca 47990280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 252
Target Start/End: Original strand, 47989844 - 47990055
Alignment:
Q  41 ggtgggatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcagg 140  Q
    ||||||||||| || |||||||||||  | || || || ||||| ||||| ||||||||||| || ||||| ||||| || || |||||||||||||| |    
T  47989844 ggtgggatgcaaatctttgtgaagactctcacaggaaaaacaatcactcttgaggtggagagctccgatacaattgacaatgtcaaggccaagattcaag 47989943  T
Q  141 ataaggagggcattccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtc 240  Q
    | ||||| || || ||||| || |||||| |  | ||||||||||| ||||| ||||| ||||| || ||  | || |||||||| || |||||||||||    
T  47989944 acaaggaagggatcccacctgaccagcagaggctcatctttgctggaaaacagcttgaagatggcagaacattggccgattataacatccagaaagagtc 47990043  T
Q  241 tacgcttcatct 252  Q
     || ||||||||    
T  47990044 aactcttcatct 47990055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 270
Target Start/End: Complemental strand, 42609569 - 42609451
Alignment:
Q  152 attccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaaggactcttgctgattataatattcagaaagagtctacgcttcatc 251  Q
    |||||||||||||||||||||||||| || ||||| || || ||||| |||||| | ||  | |||||||| ||||| ||||| || || || |||||||    
T  42609569 attccaccggatcagcagcgattgattttcgctggtaagcagcttgaagatggacgcaccttagctgattacaatatccagaaggaatcgactcttcatc 42609470  T
Q  252 tggttctcaggctccgtgg 270  Q
    | ||||||||||| |||||    
T  42609469 tcgttctcaggcttcgtgg 42609451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 47989621 - 47989722
Alignment:
Q  46 gatgcagatatttgtgaagacgttgaccgggaagacaattactctagaggtggagagttctgatactattgataacgtgaaggccaagattcaggataag 145  Q
    |||||| || |||||||||||  | || || |||||||| || || ||||||||||| || ||||| ||||| || || |||||||||||||| || |||    
T  47989621 gatgcaaatctttgtgaagactctcacaggaaagacaatcacccttgaggtggagagctccgatacaattgacaatgttaaggccaagattcaagacaag 47989720  T
Q  146 ga 147  Q
    ||    
T  47989721 ga 47989722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0971 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 115 - 167
Alignment:
Q  155 ccaccggatcagcagcgattgatctttgctgggaaacaacttgaggatggaag 207  Q
    ||||||||||||| ||| ||||| |||||||| ||||| ||||| ||||||||    
T  115 ccaccggatcagcggcgtttgatttttgctggaaaacagcttgaagatggaag 167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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