View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19825_low_8 (Length: 433)
Name: NF19825_low_8
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19825_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 415
Target Start/End: Complemental strand, 27593331 - 27592902
Alignment:
| Q |
12 |
tttacattatgaaaatattttcacatttcattttcttaaacttccagtccttttaaagttctaacaa----------------------ggagatggaag |
89 |
Q |
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| T |
27593331 |
tttacattatgaaaatatttccacatttcattttcttaaacttccagtccttttaaagttctaacaatgacattttaagttgctaacaaggacatggaag |
27593232 |
T |
|
| Q |
90 |
acttgcatggtaacatttgtggtagaggataatacgaaaactgaagaaaatgcatttttagaaacaataaaaataatgtttggacattttnnnnnnnntc |
189 |
Q |
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| T |
27593231 |
acttgcatggtaacatttgtggtagag-ataatacgaaaactgaagaaaatgcatttttagaaacaataaaaataatgtttggacattttaaaaaaaatc |
27593133 |
T |
|
| Q |
190 |
taaaaatgctag----aattcttttaaaaaagtatgaggtatatatttgatctatattctcnnnnnnnnattattagtttaatgaaaatataaataaatt |
285 |
Q |
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| T |
27593132 |
taaaaatgctagaattaattcttttaaaaaagtatgaggtatatatttgatctatattctc-tttttttattattagtttaatgaaaatataaataaatt |
27593034 |
T |
|
| Q |
286 |
gagagtaaacatgccttaatacaaaactaagagattacttgtgggaa--gnnnnnnnnnctagatattaacggagcacaaagcatactcaatccatatac |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27593033 |
gagagtaaacatgccttaatacaaaactaagagattacttgtgggaaagaaaaaaaaaactagatattaacggagcacaaagcatactcaatccgtatac |
27592934 |
T |
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| Q |
384 |
aaaacagctacccaacatatggagaagataaa |
415 |
Q |
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| T |
27592933 |
aaaacagctacccaacatatggagaagataaa |
27592902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 35145769 - 35145873
Alignment:
| Q |
72 |
ctaacaaggagatggaagacttgcatggtaacatttgtggtagaggataatacgaaaactgaagaaaatgcatttttagaaacaataaaaataatgtttg |
171 |
Q |
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| T |
35145769 |
ctaacaaggacatggaagactcgcatagtaacaattgtggtaga-gataaaacaaaatctggaaaaaatgcattttcagaaaaaataaaagtaatgtttg |
35145867 |
T |
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| Q |
172 |
gacatt |
177 |
Q |
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||||| |
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| T |
35145868 |
aacatt |
35145873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 35145687 - 35145756
Alignment:
| Q |
12 |
tttacattatgaaaatattttcacatttcattttcttaaacttccagtccttttaaagttctaacaagga |
81 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||| | |||| ||||||| ||||| |||||| |
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| T |
35145687 |
tttacagtatgaaaatattttcacatttaattttcttaaactactagtcattttaaatttctagcaagga |
35145756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 29026437 - 29026585
Alignment:
| Q |
27 |
tattttcacatttcattttcttaaacttccagtccttttaaagttctaacaaggagatggaagacttgcatggtaacatttgtggtagaggataatacga |
126 |
Q |
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||||||||| ||||||||||||||||| | | || ||||||| | |||||||||| || |||||||||||| |||| ||||| |||| || ||||| | |
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| T |
29026437 |
tattttcacttttcattttcttaaactgctattcgttttaaattgctaacaaggacattgaagacttgcataacaacaattgtgataga-gagaatacaa |
29026535 |
T |
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| Q |
127 |
aaactgaagaaaatgcatttttagaaacaataaaaataatgtttggacattt |
178 |
Q |
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|||||| |||||| ||||||||||| | || ||||| ||||||||||||| |
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| T |
29026536 |
aaactg--gaaaatacatttttagaatctgtagaaatattgtttggacattt |
29026585 |
T |
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