View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19826_low_1 (Length: 596)

Name: NF19826_low_1
Description: NF19826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19826_low_1
NF19826_low_1
[»] chr8 (2 HSPs)
chr8 (1-575)||(13047046-13047620)
chr8 (537-579)||(32688732-32688774)
[»] chr7 (3 HSPs)
chr7 (469-579)||(15743255-15743365)
chr7 (521-579)||(15742096-15742154)
chr7 (521-579)||(23118309-23118367)
[»] chr4 (7 HSPs)
chr4 (469-579)||(30101326-30101436)
chr4 (216-472)||(29404818-29405066)
chr4 (519-579)||(52038914-52038974)
chr4 (521-579)||(13417600-13417658)
chr4 (521-579)||(48367387-48367445)
chr4 (521-579)||(56331690-56331748)
chr4 (221-351)||(26094502-26094633)
[»] chr1 (6 HSPs)
chr1 (469-579)||(28876514-28876624)
chr1 (483-579)||(51837532-51837628)
chr1 (521-579)||(37810817-37810875)
chr1 (521-579)||(28875335-28875393)
chr1 (521-579)||(44031803-44031861)
chr1 (469-511)||(51837487-51837529)
[»] chr3 (3 HSPs)
chr3 (469-579)||(6529261-6529372)
chr3 (469-579)||(30574839-30574945)
chr3 (521-579)||(30576021-30576079)
[»] chr6 (6 HSPs)
chr6 (469-579)||(1573011-1573121)
chr6 (521-579)||(11381399-11381457)
chr6 (221-351)||(6429262-6429389)
chr6 (221-351)||(12839864-12839994)
chr6 (521-579)||(1574222-1574280)
chr6 (521-579)||(29657203-29657261)
[»] chr5 (5 HSPs)
chr5 (519-579)||(20013895-20013955)
chr5 (521-579)||(41422225-41422283)
chr5 (521-579)||(14672316-14672374)
chr5 (521-579)||(41423387-41423445)
chr5 (520-579)||(17900175-17900233)
[»] chr2 (3 HSPs)
chr2 (521-579)||(4518762-4518820)
chr2 (521-579)||(44112623-44112681)
chr2 (521-572)||(44113183-44113234)


Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Original strand, 13047046 - 13047620
Alignment:
Q  1 aagaaaaattgcgaagaaaagagtgggggtcggggaagtgtagttaatgaagcgataagtgttggnnnnnnngagcagaaccagtcacaaggcagcgaga 100  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||| ||||    
T  13047046 aagaaaaatcacgaagaaaagagtgggggtcggggaagtgtagttaatgaagcgataagtgttggaaaaaaagagaagaaccagtcacaaggcagtgaga 13047145  T
Q  101 aaagaagatcaagtttgcaggatcgaacctcaactgctgccggaacaacaaannnnnnnacacgatgccaaaaaagtcagattcatcacaaaaaatcttc 200  Q
    |||| ||| |||||| ||||||||||||||||||||| |||||||||||||        ||| |||||||||||||||||||||||||||||||||||||    
T  13047146 aaagcagaccaagttggcaggatcgaacctcaactgccgccggaacaacaattttttttacatgatgccaaaaaagtcagattcatcacaaaaaatcttc 13047245  T
Q  201 caccatacaaaagacatgcacgacaagttggactctaaaatgttttccagattttttgtgcatcgacaatggcaactactagaacttctcaatcaaaagc 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  13047246 caccatacaaaagacatgcatgacaagttggactctaaaatgttttccagattttttgtgcattgacaatggcaactactggaacttctcaatcaaaagc 13047345  T
Q  301 acttcatcaattttggcatcaaattctatggaggtttggcgttgtactgattagtgccttttcggttattatagaaactattgattttctgattacagtt 400  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047346 acttcatcaatttcggcatcaaattctatggaggtttggcgttgtcctgattagtgccttttcggttattatagaaactattgattttctgattacagtt 13047445  T
Q  401 ctggaaaagatacaaaaggccacttatgcatgtcattgcttggaagaataaactagtaccgaagaatcagtttctttatctcagccttgaggacaagact 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047446 ctggaaaagatacaaaaggccacttatgcatgtcattgcttggaagaataaactagtaccgaagaatcagtttctttatctcagccttgaggacaagact 13047545  T
Q  501 gtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttatttta 575  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  13047546 gtttttctagcagtcggtaatgttaggtgtcgggtggtattgatagggtaattgctgatgcagttagttatttta 13047620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 579
Target Start/End: Complemental strand, 32688774 - 32688732
Alignment:
Q  537 gtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    ||||||||||||||| ||||||||| || ||||||||||||||    
T  32688774 gtattgatagggtaactgctgatgcagtcagttattttaatat 32688732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 469 - 579
Target Start/End: Original strand, 15743255 - 15743365
Alignment:
Q  469 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 568  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || |||    
T  15743255 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagt 15743354  T
Q  569 tattttaatat 579  Q
    |||||||||||    
T  15743355 tattttaatat 15743365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 15742096 - 15742154
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  15742096 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 15742154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 23118309 - 23118367
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||| ||||||||| ||||||| | |||||||||||||||||    
T  23118309 tgttaggtatcgggtggtattcatagggtaactgctgatccagttagttattttaatat 23118367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 469 - 579
Target Start/End: Original strand, 30101326 - 30101436
Alignment:
Q  469 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 568  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || |||    
T  30101326 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagt 30101425  T
Q  569 tattttaatat 579  Q
    |||||||||||    
T  30101426 tattttaatat 30101436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 472
Target Start/End: Complemental strand, 29405066 - 29404818
Alignment:
Q  216 atgcacgacaagttggactctaaaatgttttccagattttttgtgcatcgacaatggcaactactagaacttctcaatcaaaagcacttcatcaattttg 315  Q
    ||||||| ||||||||||||| ||||||||| ||||||| | |||| | || ||||||||||||| |   ||| ||||||| || ||||||| ||||| |    
T  29405066 atgcacggcaagttggactctcaaatgtttttcagatttctcgtgctttgataatggcaactact-ggctttcccaatcaatagaacttcattaatttcg 29404968  T
Q  316 gcatcaaattctatggaggtttggcgttgtactgat--tagtgccttttcggttattatagaaactattgattttctgattacagttctggaaaagatac 413  Q
    | | | |||||| ||||| |||||| |||| |||||  ||| ||    | ||||||||||| ||||||||||||  ||||||||  ||| |||||||       
T  29404967 gtaac-aattctgtggagctttggcattgtcctgataatagagc----ttggttattatagcaactattgatttgttgattaca-atctagaaaaga--- 29404877  T
Q  414 aaaaggccacttatgcatgtcattgcttggaagaataaactagtaccgaagaatcagtt 472  Q
    || || |||||  |  ||||||  ||||||||||||||||||||||| |||||||||||    
T  29404876 aacagaccactggtctatgtcaaagcttggaagaataaactagtacccaagaatcagtt 29404818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 579
Target Start/End: Complemental strand, 52038974 - 52038914
Alignment:
Q  519 aatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||||| || ||||||||||||||||||| ||||||||| || |||||||| |||||    
T  52038974 aatgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttatttaaatat 52038914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 13417600 - 13417658
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||||| ||||||||  || ||||||||||||||    
T  13417600 tgttaggtatcgggtggtattgatagggtaactgctgatgtagtaagttattttaatat 13417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 48367387 - 48367445
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  48367387 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 48367445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 56331690 - 56331748
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||  |||||||||||||    
T  56331690 tgttaggtatctggtggtattgatagggtaactgctgatgcagtcggttattttaatat 56331748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 351
Target Start/End: Complemental strand, 26094633 - 26094502
Alignment:
Q  221 cgacaagttggactctaaaatgttttccagattttttgtg--catcgacaatggcaactactagaacttctcaatcaaaagcacttcatcaattttggca 318  Q
    |||||||||||||||| |||||||||  ||||||||||||  | |  | ||||| ||||||| ||| ||| ||||||| |  ||||||||||||| ||||    
T  26094633 cgacaagttggactctcaaatgttttttagattttttgtgctctttaataatgg-aactactggaatttcccaatcaatataacttcatcaatttcggca 26094535  T
Q  319 tcaaattctatggaggtttggcgttgtactgat 351  Q
     |||||| | ||||  |||||| |||| |||||    
T  26094534 acaaattttgtggacctttggcattgtcctgat 26094502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 469 - 579
Target Start/End: Original strand, 28876514 - 28876624
Alignment:
Q  469 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 568  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || |||    
T  28876514 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagt 28876613  T
Q  569 tattttaatat 579  Q
    |||||||||||    
T  28876614 tattttaatat 28876624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 483 - 579
Target Start/End: Original strand, 51837532 - 51837628
Alignment:
Q  483 agccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    ||||||||||||||  ||||||||||||  |||||| ||||||||| || ||||| ||||||||||| | ||||||||| || ||||||||||||||    
T  51837532 agccttgaggacaacgctgtttttctagaggtcggtgatgttaggtatccggtggcattgatagggtgactgctgatgcagtcagttattttaatat 51837628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 37810817 - 37810875
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  37810817 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattttaatat 37810875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 28875335 - 28875393
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  28875335 tgttaggtatctggtggtattgatagggtgactgctgatgcagtcagttattttaatat 28875393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Complemental strand, 44031861 - 44031803
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||  |||||||||||||    
T  44031861 tgttaggtatctggtggtattgatagggtaactgctgatgcagtcggttattttaatat 44031803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 511
Target Start/End: Original strand, 51837487 - 51837529
Alignment:
Q  469 agtttctttatctcagccttgaggacaagactgtttttctagc 511  Q
    |||||||||| |||||||||||||||||| |||||||||||||    
T  51837487 agtttctttaactcagccttgaggacaaggctgtttttctagc 51837529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 469 - 579
Target Start/End: Complemental strand, 6529372 - 6529261
Alignment:
Q  469 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgc-tgatgcggttag 567  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||||| ||| ||||||  | ||    
T  6529372 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtaactgcttgatgcaatcag 6529273  T
Q  568 ttattttaatat 579  Q
    ||||||||||||    
T  6529272 ttattttaatat 6529261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 469 - 579
Target Start/End: Complemental strand, 30574945 - 30574839
Alignment:
Q  469 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 568  Q
    |||||||||| |||||||||||||||||| ||||||||||||    ||| |||||| ||| || ||||||||||||||||||| |||||| || || |||    
T  30574945 agtttctttaactcagccttgaggacaaggctgtttttctag----cggaaatgtttggtatctggtggtattgatagggtaactgctgacgcagtcagt 30574850  T
Q  569 tattttaatat 579  Q
    |||||||||||    
T  30574849 tattttaatat 30574839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Complemental strand, 30576079 - 30576021
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  30576079 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 30576021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 469 - 579
Target Start/End: Complemental strand, 1573121 - 1573011
Alignment:
Q  469 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 568  Q
    |||||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||| || |||| |||||||||||| | ||||||||| || |||    
T  1573121 agtttctttaactcagccttgaggacaaggctgtttttctagcggccggtaatgttaggtatccggtgatattgatagggtgactgctgatgcagtcagt 1573022  T
Q  569 tattttaatat 579  Q
    |||||||||||    
T  1573021 tattttaatat 1573011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 11381399 - 11381457
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  11381399 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattttaatat 11381457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 351
Target Start/End: Complemental strand, 6429389 - 6429262
Alignment:
Q  221 cgacaagttggactctaaaatgttttccagattttttgtgcatcgacaatggcaactactagaacttctcaatcaaaagcacttcatcaattttggcatc 320  Q
    |||||||||||||||  ||||||||| |||||||||||||| |  | ||||| ||||||| ||| ||| ||||||| |  ||||||||||||| |||| |    
T  6429389 cgacaagttggactc--aaatgtttttcagattttttgtgctttaataatgg-aactactggaatttcccaatcaatataacttcatcaatttcggcaac 6429293  T
Q  321 aaattctatggaggtttggcgttgtactgat 351  Q
    ||||| | ||||  |||||| |||| |||||    
T  6429292 aaattttgtggacctttggcattgtcctgat 6429262  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 351
Target Start/End: Complemental strand, 12839994 - 12839864
Alignment:
Q  221 cgacaagttggactctaaaatgttttccaga-ttttttgtgcatcgacaatggcaactactagaacttctcaatcaaaagcacttcatcaattttggcat 319  Q
    |||||||||||||||| ||||||||| |||| |||||| ||| | || ||||| ||||||| ||| ||| ||||||| |  ||||||| ||||| ||||     
T  12839994 cgacaagttggactctcaaatgtttttcagatttttttatgctttgataatgg-aactactggaatttcccaatcaatataacttcataaatttcggcaa 12839896  T
Q  320 caaattctatggaggtttggcgttgtactgat 351  Q
    |||||| | ||||| |||||| |||| |||||    
T  12839895 caaattttgtggagctttggcattgtcctgat 12839864  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Complemental strand, 1574280 - 1574222
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  1574280 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 1574222  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 29657203 - 29657261
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||||| |||| |||| || ||||||||||||||    
T  29657203 tgttaggtatccggtggtattgatagggtaactgctaatgcagtcagttattttaatat 29657261  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 519 - 579
Target Start/End: Complemental strand, 20013955 - 20013895
Alignment:
Q  519 aatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||||| || |||||||||||||||||||||||||||||  | ||||||||||||||    
T  20013955 aatgttaggtatcgggtggtattgatagggtaattgctgatgcaatcagttattttaatat 20013895  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 41422225 - 41422283
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  41422225 tgttaggtatctggtggtattgatagggtaactgctgatgcagtaagttattttaatat 41422283  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 14672316 - 14672374
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  14672316 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 14672374  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Complemental strand, 41423445 - 41423387
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  41423445 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 41423387  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 579
Target Start/End: Complemental strand, 17900233 - 17900175
Alignment:
Q  520 atgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    ||||||||| || ||||||||||| ||||||| ||||||||| || ||||||||||||||    
T  17900233 atgttaggtatcgggtggtattga-agggtaactgctgatgcagtcagttattttaatat 17900175  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 4518762 - 4518820
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  4518762 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 4518820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 44112623 - 44112681
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 579  Q
    |||||||| || ||||| ||||||||||||| ||||||||| || ||||||||||||||    
T  44112623 tgttaggtatccggtgggattgatagggtaactgctgatgcagtcagttattttaatat 44112681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 521 - 572
Target Start/End: Complemental strand, 44113234 - 44113183
Alignment:
Q  521 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttatt 572  Q
    |||||||| || ||||||||||||||||||| ||||||||| || |||||||    
T  44113234 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttatt 44113183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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