View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19827_low_2 (Length: 240)
Name: NF19827_low_2
Description: NF19827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19827_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 35089515 - 35089299
Alignment:
| Q |
21 |
cataatgtgtttttgatggatataatattcttaactgtttttcacttgtctcgtgtaattggtgctgtaggtttttgaaattccaaacctattttgtcat |
120 |
Q |
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| T |
35089515 |
cataatgtgtttttgatggatataatattcttagctatttttcacttgtctcgtgtaattggtgctgtaggtttttgaaattccaaacctattttgtcat |
35089416 |
T |
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| Q |
121 |
ctgctggaaatggaaattcccatacataaatttaggttcatttgttttcaacttttctatgtgnnnnnnnnnnnnnnccagtttaaggaaaagaggacta |
220 |
Q |
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| T |
35089415 |
ctgctggaaatggaaattcccatacataaatttaggttcatttgttttcaacttttctatgtg---aaaaaaaaataccagtttaaggaaaagaggacta |
35089319 |
T |
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| Q |
221 |
ctcatattcgtcatttacgt |
240 |
Q |
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|||||||||||||||||||| |
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| T |
35089318 |
ctcatattcgtcatttacgt |
35089299 |
T |
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