View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19828_high_19 (Length: 401)

Name: NF19828_high_19
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19828_high_19
NF19828_high_19
[»] chr4 (5 HSPs)
chr4 (1-382)||(35249952-35250333)
chr4 (203-319)||(51220010-51220126)
chr4 (203-319)||(51220797-51220913)
chr4 (207-314)||(51220430-51220537)
chr4 (317-349)||(51220812-51220844)
[»] chr1 (19 HSPs)
chr1 (3-266)||(27777591-27777844)
chr1 (3-266)||(27782115-27782370)
chr1 (115-266)||(27781234-27781385)
chr1 (158-299)||(38226923-38227063)
chr1 (227-314)||(27777474-27777561)
chr1 (227-314)||(27780991-27781078)
chr1 (3-86)||(38226805-38226888)
chr1 (227-310)||(27782400-27782483)
chr1 (231-309)||(38227211-38227289)
chr1 (203-295)||(17663550-17663642)
chr1 (227-299)||(38227135-38227207)
chr1 (227-299)||(38227063-38227135)
chr1 (203-290)||(17700337-17700424)
chr1 (203-309)||(21899130-21899236)
chr1 (315-352)||(38226980-38227017)
chr1 (317-352)||(17663592-17663627)
chr1 (317-352)||(17700352-17700387)
chr1 (53-87)||(27781403-27781437)
chr1 (227-264)||(27781080-27781117)
[»] chr7 (3 HSPs)
chr7 (203-314)||(440904-441015)
chr7 (84-170)||(440684-440774)
chr7 (317-352)||(440919-440954)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 35249952 - 35250333
Alignment:
1 actaagacaaatgtaaaaggtaattattgataatctaaactttatatatatgttgtaagcagattgctcaataattcatgatgatattttaactaaacaa 100  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
35249952 actaagacaaatgtaaaaggtaataattgataatctaaactctatatatatgttgtaagcaaattgctcaataattcatgatgatattttaactaaacaa 35250051  T
101 cttccaattaaggaaaattacatgataacatcaagggtattcatcccacacaaaaaccataatatcattcaaaatcattaaaaagatataaaccaagacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35250052 cttccaattaaggaaaattacatgataacatcaagggtattcatcccacacaaaaaccataatatcattcaaaatcattaaaaagatataaaccaagacg 35250151  T
201 atacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcattaa 300  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
35250152 agacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaatcaaaattcttcacaacttttgacccgatttcagtttcagcttcattaa 35250251  T
301 tcttcttctcttcattatcttcaaaatcatcacttggaagctcgttcaaatccatattgtttggaattttttgccttttagc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35250252 tcttcttctcttcattatcttcaaaatcatcacttggaagctcgttcaaatccatattgtttggaattttttgccttttagc 35250333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 51220010 - 51220126
Alignment:
203 acactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatc 302  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||| ||| ||||||| | |||||| ||||||| | ||||||||||  ||| ||||||    
51220010 acactaattggtttcatcttcaaaatcatcacttggaagctcattcgaatcaaaattcataacaactattgaccctaattcagtttcactttcgttaatc 51220109  T
303 ttcttctcttcattatc 319  Q
    |||||||||||| ||||    
51220110 ttcttctcttcaatatc 51220126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 51220797 - 51220913
Alignment:
203 acactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatc 302  Q
    |||||| |||| ||||||||||||| ||||||||| |||||||||||| | ||||||| | |||| | ||||||| | ||||||||||  ||| ||||||    
51220797 acactagttggtttcatcttcaaaaccatcacttggaagctcgttcaattcaaaattcataacaattattgaccctaattcagtttcactttcgttaatc 51220896  T
303 ttcttctcttcattatc 319  Q
    |||||||||||| ||||    
51220897 ttcttctcttcaatatc 51220913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 314
Target Start/End: Complemental strand, 51220537 - 51220430
Alignment:
207 taattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatcttct 306  Q
    ||||||| ||||| ||||||| ||||||||| ||| || || |||| | ||||| | |||  | |||| |||| || ||||||| |||||||||||||||    
51220537 taattggtttcatattcaaaagcatcacttggaagatcattaaaatcataattcataacatgtattgatccgaattaagtttcaccttcattaatcttct 51220438  T
307 tctcttca 314  Q
    ||||||||    
51220437 tctcttca 51220430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 51220812 - 51220844
Alignment:
317 atcttcaaaatcatcacttggaagctcgttcaa 349  Q
    |||||||||| ||||||||||||||||||||||    
51220812 atcttcaaaaccatcacttggaagctcgttcaa 51220844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 27777844 - 27777591
Alignment:
3 taagacaaatgtaaaaggtaattattgataatctaaactttatatatatgttgtaagcagattgctcaataattcatgatgatattttaactaaacaact 102  Q
    ||||||||||||||||| |    |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |  | |    
27777844 taagacaaatgtaaaagatggaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatgatattttaactagaagaat 27777745  T
103 tccaattaaggaaaattacatgataacatcaagggtattcatcccacacaaaaaccataatatcattcaaaatcattaaaaagatataaaccaagacgat 202  Q
    |   ||||| ||||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||||||||||          |||||||||||||     
27777744 tgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcataatatcattcaaaatcat----------taaaccaagacgag 27777655  T
203 acactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcaca 266  Q
    ||||||||||| |||||||||| |||||||||||| || |||||||||||  ||||||||||||    
27777654 acactaattggtttcatcttcacaatcatcacttgtaaactcgttcaaatctaaattcttcaca 27777591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 27782115 - 27782370
Alignment:
3 taagacaaatgtaaaaggtaattattgataatctaaactttatatatatgttgtaagcagattgctcaataattcatgatgatat--tttaactaaacaa 100  Q
    |||||||||||||||||||    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||||||||||||  ||||||||||  |    
27782115 taagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcgaattgctcaataattcatgatgatatactttaactaaaaga 27782214  T
101 cttccaattaaggaaaattacatgataacatcaagggtattcatcccacacaaaaaccataatatcattcaaaatcattaaaaagatataaaccaagacg 200  Q
     ||   ||||| ||||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||||||||||          ||||||||||||    
27782215 attgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcataatatcattcaaaatcat----------taaaccaagacg 27782304  T
201 atacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcaca 266  Q
    | ||||||||||| |||||||||| |||||||||||| || |||||||||||  ||||||||||||    
27782305 agacactaattggtttcatcttcacaatcatcacttgaaaactcgttcaaatctaaattcttcaca 27782370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 115 - 266
Target Start/End: Complemental strand, 27781385 - 27781234
Alignment:
115 aaattacatgataacatcaagggtattcatcccacacaaaaaccataatatcattcaaaatcattaaaaagatataaaccaagacgatacactaattgga 214  Q
    ||||||||||| |||||||||||||| ||||||| | ||||  |||||||||||||||||||||||||||||||||||| ||||||| || |||| |       
27781385 aaattacatgacaacatcaagggtatccatcccataaaaaattcataatatcattcaaaatcattaaaaagatataaactaagacgagacgctaaatatc 27781286  T
215 ttcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcaca 266  Q
    |||||||||||||| ||  |||| |||| ||||| ||| |||||||||||||    
27781285 ttcatcttcaaaattatttcttggaagcacgttcgaatcaaaattcttcaca 27781234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 38226923 - 38227063
Alignment:
158 cataatatcattcaaaatcattaaaaagatataaaccaagacgatacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaa 257  Q
    |||||||||||| |||||||  ||||| |||||||| | ||||| ||||||||||| || ||||||||| |||||||||| ||||||||||||||  |||    
38226923 cataatatcattaaaaatcacaaaaaa-atataaactatgacgagacactaattggttttatcttcaaactcatcacttggaagctcgttcaaatctaaa 38227021  T
258 ttcttcacaacttttgacccgatttcagtttcagcttcatta 299  Q
    ||||||||||||||||||||   |||||||||| ||||||||    
38227022 ttcttcacaacttttgaccctgattcagtttcaccttcatta 38227063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 27777561 - 27777474
Alignment:
227 atcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatcttcttctcttca 314  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||||||||| | ||| |||||| ||||||| |||||||||||||||    
27777561 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctcttca 27777474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 27781078 - 27780991
Alignment:
227 atcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatcttcttctcttca 314  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||||||| | ||  |||||| |||||||||||||||||||||||    
27781078 atcatcacttggaagctcgtccaaatcaaaattcttcacaacttttgaccctaattttgtttcaccttcattaatcttcttctcttca 27780991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 38226805 - 38226888
Alignment:
3 taagacaaatgtaaaaggtaattattgataatctaaactttatatatatgttgtaagcagattgctcaataattcatgatgata 86  Q
    |||||||||||||||||||    |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
38226805 taagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatgata 38226888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 27782400 - 27782483
Alignment:
227 atcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatcttcttctc 310  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||||||||| | ||| |||||| ||||||| |||||||||||    
27782400 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctc 27782483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 38227211 - 38227289
Alignment:
231 tcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatcttcttct 309  Q
    ||||||| |||||||||||||| || ||||||||||||||||||||| | |||||||||| ||||||||||| ||||||    
38227211 tcacttgaaagctcgttcaaatcaacattcttcacaacttttgaccctaattcagtttcaccttcattaatcgtcttct 38227289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 17663642 - 17663550
Alignment:
203 acactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttc 295  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||| | |||||| ||||||| | ||| |||||| ||||    
17663642 acactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcctgacaactcttgaccctaattcggtttcatcttc 17663550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 38227135 - 38227207
Alignment:
227 atcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcatta 299  Q
    ||||||||||| |||||||||||||| || |||||| |||||||||||||| | |||||||||| ||||||||    
38227135 atcatcacttggaagctcgttcaaatcaacattcttaacaacttttgaccctaattcagtttcaccttcatta 38227207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 38227063 - 38227135
Alignment:
227 atcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcatta 299  Q
    ||||||||||| ||| |||||||||| ||||||||||||| |||||||||| | ||||| |||| ||||||||    
38227063 atcatcacttggaagttcgttcaaatcaaaattcttcacatcttttgaccctaattcagcttcaccttcatta 38227135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 17700337 - 17700424
Alignment:
203 acactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttca 290  Q
    ||||||||||  ||||||||||||||||||||||| |||||| ||||||| || |||| | |||||| ||||||| | ||| ||||||    
17700337 acactaattgttttcatcttcaaaatcatcacttggaagctcattcaaatcaacattcctgacaactcttgaccctaattcggtttca 17700424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 21899130 - 21899236
Alignment:
203 acactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatc 302  Q
    ||||||||||| ||||||||||||||| ||||||| || ||| ||||||| ||||||| |   |||| ||||||| | ||| |||||| ||||  |||||    
21899130 acactaattggtttcatcttcaaaatcgtcacttgaaatctcattcaaatcaaaattcatagaaactcttgaccctaattcggtttcaccttcgctaatc 21899229  T
303 ttcttct 309  Q
    || ||||    
21899230 tttttct 21899236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 38226980 - 38227017
Alignment:
315 ttatcttcaaaatcatcacttggaagctcgttcaaatc 352  Q
    ||||||||||| ||||||||||||||||||||||||||    
38226980 ttatcttcaaactcatcacttggaagctcgttcaaatc 38227017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 352
Target Start/End: Complemental strand, 17663627 - 17663592
Alignment:
317 atcttcaaaatcatcacttggaagctcgttcaaatc 352  Q
    ||||||||||||||||||||||||||| ||||||||    
17663627 atcttcaaaatcatcacttggaagctcattcaaatc 17663592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 352
Target Start/End: Original strand, 17700352 - 17700387
Alignment:
317 atcttcaaaatcatcacttggaagctcgttcaaatc 352  Q
    ||||||||||||||||||||||||||| ||||||||    
17700352 atcttcaaaatcatcacttggaagctcattcaaatc 17700387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 27781437 - 27781403
Alignment:
53 ttgtaagcagattgctcaataattcatgatgatat 87  Q
    ||||||||| |||||||||||||||||||||||||    
27781437 ttgtaagcaaattgctcaataattcatgatgatat 27781403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 27781117 - 27781080
Alignment:
227 atcatcacttgcaagctcgttcaaataaaaattcttca 264  Q
    ||||||||||| |||||||||||||| |||||||||||    
27781117 atcatcacttggaagctcgttcaaatcaaaattcttca 27781080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 440904 - 441015
Alignment:
203 acactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaataaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatc 302  Q
    ||||||||| | |||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||| | ||||||  || |||||||||||    
440904 acactaattagtttcatcttcaaagtcatcacttggaagctcgttcaaatcaaaattcttcacaacttttggccctaattcagtaacaccttcattaatc 441003  T
303 ttcttctcttca 314  Q
     |||||||||||    
441004 atcttctcttca 441015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 440684 - 440774
Alignment:
84 atattttaactaaacaacttccaattaaggaaaattacatgataacatcaagggt----attcatcccacacaaaaaccataatatcattc 170  Q
    ||||| ||||||||||| |||| | ||||||||||||||||||  |||||||| |    || ||||||||||||||| |||||||||||||    
440684 atattataactaaacaaattcctaataaggaaaattacatgattgcatcaaggatatccatccatcccacacaaaaatcataatatcattc 440774  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 352
Target Start/End: Original strand, 440919 - 440954
Alignment:
317 atcttcaaaatcatcacttggaagctcgttcaaatc 352  Q
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440919 atcttcaaagtcatcacttggaagctcgttcaaatc 440954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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