View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_high_26 (Length: 361)
Name: NF19828_high_26
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_26 |
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| [»] scaffold0206 (1 HSPs) |
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Alignment Details
Target: scaffold0206 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 16573 - 16914
Alignment:
| Q |
1 |
aagtatttctttagtattgtggttgttgataagtgacatgatgataagattagattaactagagtttgtgagttggtggatgattaagattgctggaaat |
100 |
Q |
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|||||||| || |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| || ||||||||| ||||||||||| |
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| T |
16573 |
aagtattttttgagtattgtggttgttgataagtgacacgatgatgagattagattaactagagtttctgagttgttgaatgattaaggttgctggaaat |
16672 |
T |
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| Q |
101 |
tgcatgagattcatgggaatctttctaccatctttgtgaattgaatctgtcacacatttctctgattgatgatgatgataatgacagggaagactagtgg |
200 |
Q |
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| T |
16673 |
tgcatgagattcatgggaatctttctaccctctttgtgaattgaatttgtcacacatttctccgattgatgatgatgatgat---agggaagactagtgg |
16769 |
T |
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| Q |
201 |
agttgaacttctttgttgatgttggtcatgatgtgcattttagttagagccacggtttggatttgaatgtggcttgttccttgtggagaagtgtgtgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16770 |
agttgaacttctttgttgatgttggtcatgatgtgcattttagttagagctgcggtttggatttgaatgtggcttgttccttgtggagaagtgtgtgatt |
16869 |
T |
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| Q |
301 |
acttgaatggtgtggacatgtttcaagtttctgttaagatgatgg |
345 |
Q |
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| T |
16870 |
acttgaatggtgtggacatgtttcaagtttctgttaagatgatgg |
16914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3477236 - 3477470
Alignment:
| Q |
1 |
aagtatttctttagtattgtggttgttgataagtgacatgatgataagattagattaactagagtttgtgagttggtggatgattaagattgctggaaat |
100 |
Q |
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| T |
3477236 |
aagtatttttttagtattgtggttgttgataagtgacatgatgataagattagattaactagagtttgtgagttggtgaatgattaaggttgctggaaat |
3477335 |
T |
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| Q |
101 |
tgcatgagattcatgggaatctttctaccatctttgtgaattgaatctgtcacacatttctctgattgatgatgatgataatgacagggaagactagtgg |
200 |
Q |
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| T |
3477336 |
tgcatgagattcatgggaatctttctaccatcttggtgaattgaatttgtcacacatttctccgattgatgatgatgataatgatagggaagactagtgg |
3477435 |
T |
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| Q |
201 |
agttgaacttctttgttgatgttggtcatgatgtg |
235 |
Q |
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| T |
3477436 |
agttgaacttctttgttgatgttggtcatgatgtg |
3477470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 3477468 - 3477522
Alignment:
| Q |
291 |
gtgtgtgattacttgaatggtgtggacatgtttcaagtttctgttaagatgatgg |
345 |
Q |
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| T |
3477468 |
gtgtgtgattacttgaatggtgtggacatgtttcaagtttctgttaagatgatgg |
3477522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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