View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_high_28 (Length: 354)
Name: NF19828_high_28
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 4275306 - 4275066
Alignment:
| Q |
18 |
aataccgtgtttgtgaattcacgtgtgtaaaaccttttcaatcaataaaactaggaattcagtttcattttggtttgagtatcatcactgttacatacac |
117 |
Q |
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| T |
4275306 |
aataccgtgtttgtgaattcacgtgtgtaaaaccttttcaatcaataaaactaggaattcagtttcattttggtttgagtatcatcactgttacatacac |
4275207 |
T |
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| Q |
118 |
taaactgagtcaaactttcattcagcaacagccatgaacgctcttgttgccaccaaccgtaatttccaacgtgcatctcgaatccttggtttggattcca |
217 |
Q |
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| T |
4275206 |
taaactgagtcaaactttcattcagcaacagccatgaatgctcttgttgccaccaaccgtaatttccaacgtgcatctcgaatccttggtttggattcca |
4275107 |
T |
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| Q |
218 |
aacttgagaaaagccttctcattccttacagagaaatcaag |
258 |
Q |
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| T |
4275106 |
aacttgagaaaagccttctcattccttacagagaaatcaag |
4275066 |
T |
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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 41209392 - 41209483
Alignment:
| Q |
166 |
gccaccaaccgtaatttccaacgtgcatctcgaatccttggtttggattccaaacttgagaaaagccttctcattccttacagagaaatcaa |
257 |
Q |
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| T |
41209392 |
gccacaaaccgtaattttcaacgtgcatctcgtatccttggtttagattccaagcttgagaagagtcttctcattccatttagagaaatcaa |
41209483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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