View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_high_29 (Length: 350)
Name: NF19828_high_29
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 35500793 - 35501128
Alignment:
| Q |
15 |
tattagaactttataaaagtagtnnnnnnnttctattaaacaagctctctctggtatgaagagaaagacggcatgtggctggcaagtggcaacacaaaca |
114 |
Q |
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| T |
35500793 |
tattagaacttcataaaagtagtaaaaaaattctattaaacaagctctctctgctatgaagagaaagacggcatgtggctggcaagtggcaacacaaaca |
35500892 |
T |
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| Q |
115 |
agaatgagaggaaggtcctttttgagaagccaagcaaaccccacctctaccccaaccccaagaaaaaccacaatcttaagtataagatgaatggtatcaa |
214 |
Q |
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| T |
35500893 |
agaatgagaggaaggtcctttttgagaagccaagcaaaccccacctctaccccaaccccaagaaaaaccacaatcttaagtataagatgaatggtatcaa |
35500992 |
T |
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| Q |
215 |
ctgaatatcttagtagagtgctaccccttgctgaaaatatcagcataccatgttcttgtgatgtttacgtgttatacagaacacagtgtgaaatatannn |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35500993 |
ctgaatatcttagtagagtgctaccccttgctgaaaatatcagcataccatgttcttgtgatgtttacgtgttatacagaacacagtgtgaaatattttt |
35501092 |
T |
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| Q |
315 |
nnnnnctctcaaaacaaattttctcatagtataaca |
350 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35501093 |
tttttctctcaaaacaaattttctcatagtataaca |
35501128 |
T |
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