View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19828_high_3 (Length: 788)

Name: NF19828_high_3
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19828_high_3
NF19828_high_3
[»] chr3 (19 HSPs)
chr3 (19-779)||(12735551-12736307)
chr3 (81-237)||(32579655-32579811)
chr3 (587-719)||(38773527-38773665)
chr3 (593-696)||(25556453-25556562)
chr3 (649-739)||(28451804-28451896)
chr3 (634-735)||(46515777-46515880)
chr3 (649-739)||(972407-972499)
chr3 (635-737)||(12568681-12568785)
chr3 (635-737)||(13545145-13545249)
chr3 (649-735)||(21490370-21490458)
chr3 (587-738)||(21290150-21290308)
chr3 (657-737)||(13863686-13863767)
chr3 (656-720)||(28945837-28945902)
chr3 (637-697)||(42709898-42709959)
chr3 (578-629)||(30352896-30352947)
chr3 (649-719)||(36923594-36923665)
chr3 (649-738)||(37238853-37238944)
chr3 (656-720)||(50699810-50699875)
chr3 (649-739)||(43310338-43310430)
[»] scaffold0464 (1 HSPs)
scaffold0464 (19-779)||(6634-7379)
[»] chr7 (20 HSPs)
chr7 (81-237)||(19888504-19888660)
chr7 (81-237)||(19778723-19778879)
chr7 (637-735)||(6647514-6647614)
chr7 (81-199)||(19351793-19351911)
chr7 (105-231)||(19357055-19357181)
chr7 (141-232)||(19879702-19879793)
chr7 (587-735)||(31418045-31418198)
chr7 (637-736)||(39854165-39854265)
chr7 (586-739)||(21388032-21388192)
chr7 (137-215)||(19721197-19721275)
chr7 (134-230)||(19598578-19598674)
chr7 (649-739)||(38073659-38073751)
chr7 (620-739)||(45278695-45278821)
chr7 (587-704)||(10679130-10679253)
chr7 (620-718)||(38652690-38652788)
chr7 (585-738)||(40211751-40211910)
chr7 (648-696)||(31622750-31622798)
chr7 (649-739)||(41888880-41888972)
chr7 (592-702)||(46610266-46610381)
chr7 (649-694)||(4020572-4020617)
[»] scaffold1157 (1 HSPs)
scaffold1157 (587-738)||(1885-2043)
[»] chr2 (19 HSPs)
chr2 (86-282)||(18914343-18914536)
chr2 (587-702)||(27414071-27414191)
chr2 (84-252)||(18909593-18909758)
chr2 (83-247)||(18921488-18921649)
chr2 (586-739)||(11941489-11941644)
chr2 (576-702)||(44721360-44721491)
chr2 (593-688)||(3888767-3888867)
chr2 (599-702)||(19159538-19159646)
chr2 (594-691)||(36210373-36210478)
chr2 (637-738)||(6590626-6590729)
chr2 (649-716)||(10500328-10500396)
chr2 (649-739)||(32227431-32227523)
chr2 (637-736)||(32656243-32656344)
chr2 (621-704)||(28813423-28813511)
chr2 (649-711)||(33830307-33830370)
chr2 (649-734)||(35310195-35310282)
chr2 (621-697)||(8333439-8333520)
chr2 (656-720)||(12497287-12497352)
chr2 (656-701)||(45075689-45075734)
[»] chr6 (6 HSPs)
chr6 (97-237)||(14748518-14748657)
chr6 (586-739)||(154183-154343)
chr6 (587-674)||(9464597-9464690)
chr6 (638-720)||(32785841-32785924)
chr6 (587-718)||(33972611-33972748)
chr6 (587-666)||(7269696-7269781)
[»] chr1 (18 HSPs)
chr1 (587-702)||(51672749-51672869)
chr1 (592-738)||(2614797-2614950)
chr1 (587-735)||(7648692-7648847)
chr1 (593-715)||(13132130-13132258)
chr1 (649-739)||(3491499-3491591)
chr1 (634-710)||(49872191-49872268)
chr1 (656-739)||(8550386-8550471)
chr1 (649-738)||(13352310-13352402)
chr1 (657-739)||(298195-298279)
chr1 (637-704)||(27211335-27211402)
chr1 (592-735)||(50746016-50746167)
chr1 (592-739)||(52141501-52141655)
chr1 (605-704)||(2692406-2692511)
chr1 (649-709)||(5198820-5198881)
chr1 (658-735)||(21276636-21276715)
chr1 (138-201)||(43986909-43986972)
chr1 (137-178)||(43907684-43907725)
chr1 (649-694)||(48722765-48722810)
[»] chr5 (9 HSPs)
chr5 (576-738)||(3344873-3345042)
chr5 (587-718)||(2903368-2903506)
chr5 (586-702)||(42655922-42656043)
chr5 (586-734)||(25037262-25037417)
chr5 (592-719)||(32135824-32135956)
chr5 (587-685)||(28085220-28085323)
chr5 (593-686)||(13789633-13789731)
chr5 (596-696)||(10333823-10333930)
chr5 (637-701)||(39796032-39796096)
[»] chr4 (15 HSPs)
chr4 (587-739)||(17268796-17268954)
chr4 (587-735)||(52278991-52279146)
chr4 (640-738)||(26889935-26890035)
chr4 (649-739)||(10109215-10109307)
chr4 (592-694)||(11348010-11348118)
chr4 (608-735)||(32055045-32055179)
chr4 (656-739)||(22409423-22409508)
chr4 (658-737)||(26533186-26533267)
chr4 (637-739)||(51675870-51675973)
chr4 (649-739)||(32318512-32318603)
chr4 (587-636)||(26889583-26889632)
chr4 (650-736)||(4960442-4960534)
chr4 (634-738)||(14136633-14136739)
chr4 (657-722)||(20574954-20575020)
chr4 (649-709)||(24010275-24010336)
[»] chr8 (17 HSPs)
chr8 (587-739)||(17867438-17867597)
chr8 (572-696)||(24991769-24991898)
chr8 (640-739)||(2539831-2539931)
chr8 (637-694)||(31451307-31451364)
chr8 (598-694)||(38730215-38730316)
chr8 (587-688)||(40037507-40037614)
chr8 (578-636)||(2540217-2540275)
chr8 (137-178)||(42693665-42693706)
chr8 (598-675)||(3447429-3447511)
chr8 (656-736)||(11257854-11257936)
chr8 (657-737)||(37456109-37456191)
chr8 (637-736)||(41128125-41128226)
chr8 (649-720)||(7107518-7107590)
chr8 (649-716)||(8072526-8072594)
chr8 (657-739)||(30069797-30069881)
chr8 (656-701)||(1042800-1042845)
chr8 (649-709)||(16037307-16037368)
[»] scaffold0154 (1 HSPs)
scaffold0154 (637-739)||(36407-36511)
[»] scaffold0524 (1 HSPs)
scaffold0524 (649-694)||(1494-1539)
[»] scaffold0102 (1 HSPs)
scaffold0102 (649-735)||(21233-21321)


Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 779
Target Start/End: Original strand, 12735551 - 12736307
Alignment:
Q  19 gaatgggtatgagactgtaatcaaagttgcccttgtctggtactcggaatgatctaagcaaaaggtgggtgttccgaggcgatcgctgaaggtgcagttt 118  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  12735551 gaatggatatgagactgtaatcaaagttgccccagtctggtactcggaatgatcttagcaaaaggtgggtgttccgaggcgatcgccgaaggtgcagttt 12735650  T
Q  119 agcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttctacg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  12735651 agcgaaggaaggatcatgagagattagggttttccatgatttgcaaacacatttgaattgcatcaaagttttgacaggaagtcgtgaaagaatttctacg 12735750  T
Q  219 ataagttcatcaagaaggactatcagcgaggttgtagcgcagcagtttgaaggcggagactttgtcgaataagggcaattcatagtagctatgttatgta 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  | |||||||||||||||| ||||||||||    
T  12735751 ataagttcatcaagaaggactatcagcgaggttgtagcgcagcagtatgaaggcggagactttgtcgaaggaaggcaattcatagtagcaatgttatgta 12735850  T
Q  319 tttgggtaactaaaaagaaagcagtgatgttgttgaaaactgaaatcgaaattgaaagtgtggaatcctaacctaataaacctttgcggaatttcacaat 418  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12735851 ttttggtcactaaaaagaaagcagtgatgttgttgaaaactgaaatcgaaattgaaagtgtggaaccctaacctaataaacctttgcggaatttcacaat 12735950  T
Q  419 cattatcacgaggtttctttacggaaaagtagtaagaggttaaattttgttttataccaacnnnnnnngggtttcaaacacggagacgtacttctactgg 518  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||| ||    
T  12735951 catcatcacgaggtttctttacggaaaagtagtaagaggttaaattttgttttataccaacaaaaaaagggtttcaaacaaggagacgtacttctaccgg 12736050  T
Q  519 acatcgtggatacattcatctatttatttaatttaagggtcgtgttaaattatattatgcccttggaacacaggttaagcattaaattcttgccactaat 618  Q
    ||||| |||||||||||    |||||||||||||||||||||||||||      |||||||||| ||||||| ||||||| ||||||| |||||||| ||    
T  12736051 acatcatggatacattc----atttatttaatttaagggtcgtgttaa-----cttatgcccttagaacacatgttaagcgttaaatttttgccactgat 12736141  T
Q  619 agtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatcttaacatatgc 713  Q
     ||||| |||||||||||     |||||||||||||||| || | ||||||||| |||||| |||||||||||||||||||||| ||| |||||||||||    
T  12736142 ggtaagcattaattgaaaaaaattaatattagatttttttaaaagtaaattaacgcaattttcgagacataatttttattagtggaatgttaacatatgc 12736241  T
Q  714 cctaagga-ccaagttaacatttccctctnnnnnnntatactttattggattattattgatattctt 779  Q
    |||||||| |||||||||||||| ||| |       |||||||||||||||||||||||||| ||||    
T  12736242 cctaaggacccaagttaacattttcct-ttaaaaaatatactttattggattattattgatactctt 12736307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 81 - 237
Target Start/End: Original strand, 32579655 - 32579811
Alignment:
Q  81 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 180  Q
    |||||||||||||| |||||||| ||||| || | ||| ||||||   ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  32579655 aggtgggtgttccgtggcgatcgatgaagatgaaatttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgca 32579754  T
Q  181 tcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaagga 237  Q
    | |||||||| |||||||| ||||| || ||||| ||||| ||||||||||| ||||    
T  32579755 taagagttttgacaggaaggcgtgataggatttccacgatgagttcatcaaggagga 32579811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 587 - 719
Target Start/End: Complemental strand, 38773665 - 38773527
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 681  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||     ||||||||||| ||||||||| ||||||||| |||||| | ||||    
T  38773665 cacatgttaagcattaaattcttaccactaatggtaagtattaattgaaaataattaatattagatattttgaacattaaattaacgcaattttcaagac 38773566  T
Q  682 ataatttttattagtgaaa-tcttaacatatgccctaag 719  Q
    | |||||  |||||||||| |||||| || |||||||||    
T  38773565 aaaatttccattagtgaaattcttaatatgtgccctaag 38773527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 593 - 696
Target Start/End: Complemental strand, 25556562 - 25556453
Alignment:
Q  593 ttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaatttccgagacataat 686  Q
    |||||||||||||||||| |||||||  ||||||||||||||||      |||||||||||||||||| || |||| || | |||||||||| |||||||    
T  25556562 ttaagcattaaattcttgtcactaatgataagtattaattgaaaaaaaattaatattagattttttgagcagtaaactatcgcaatttccgatacataat 25556463  T
Q  687 ttttattagt 696  Q
    ||||||||||    
T  25556462 ttttattagt 25556453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 649 - 739
Target Start/End: Original strand, 28451804 - 28451896
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    ||||||| |||||||||||||||||||| | | ||||||||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||    
T  28451804 ttttgaataataaattaacacaatttccaatatataatttttattagtggaattcttaacatgtgccctaagggcacaagttaacatttccct 28451896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 634 - 735
Target Start/End: Complemental strand, 46515880 - 46515777
Alignment:
Q  634 aaataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatc-ttaacatatgccctaaggac-caagttaac 731  Q
    ||||||||||| |||||||||  |||||||||||||||||| ||| |||  |||||||||||||||||| |||||||||| | ||||||| |||||| ||    
T  46515880 aaataatattaaattttttgagaaataaattaacacaattttcgatacaatatttttattagtgaaatcattaacatatgtcttaaggacacaagttcac 46515781  T
Q  732 attt 735  Q
    ||||    
T  46515780 attt 46515777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 649 - 739
Target Start/End: Complemental strand, 972499 - 972407
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    |||| ||||||||||||| ||| ||||| | || |||||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||    
T  972499 ttttaaacaataaattaatacagtttccaatacctaatttttattagtggaattcttaacatgtgccctaaggacacaagttaacatttccct 972407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 635 - 737
Target Start/End: Original strand, 12568681 - 12568785
Alignment:
Q  635 aataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaaca 732  Q
    |||| ||||| || |||||| ||||||||||| ||||||| | | | ||||||||||||| ||||| ||||||||| |||||||||| | ||||||||||    
T  12568681 aatagtattaaatattttgagcaataaattaagacaatttacaataaataatttttattaatgaaattcttaacatgtgccctaagggcacaagttaaca 12568780  T
Q  733 tttcc 737  Q
    |||||    
T  12568781 tttcc 12568785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 635 - 737
Target Start/End: Original strand, 13545145 - 13545249
Alignment:
Q  635 aataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaaca 732  Q
    |||| ||||| || |||||| ||||||||||| ||||||| | | | ||||||||||||| ||||| ||||||||| |||||||||| | ||||||||||    
T  13545145 aatagtattaaatattttgagcaataaattaagacaatttacaataaataatttttattaatgaaattcttaacatgtgccctaagggcacaagttaaca 13545244  T
Q  733 tttcc 737  Q
    |||||    
T  13545245 tttcc 13545249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 649 - 735
Target Start/End: Complemental strand, 21490458 - 21490370
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacattt 735  Q
    |||||||||||||||||||||||||||| | | ||||||| ||||||| ||| ||||||||| ||| |||||||| |||||||| ||||    
T  21490458 ttttgaacaataaattaacacaatttccaatatataatttatattagtggaattcttaacatgtgctctaaggacacaagttaatattt 21490370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 738
Target Start/End: Original strand, 21290150 - 21290308
Alignment:
Q  587 cacaggttaagcattaaatt-cttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 680  Q
    |||| ||||||||||||||| |||||||||||| ||||  ||||| |||||     |||||||| ||||||| | ||||||||||||| ||||||||| |    
T  21290150 cacatgttaagcattaaatttcttgccactaatggtaaa-attaaatgaaaaaaattaatattatattttttaagcaataaattaacataatttccgata 21290248  T
Q  681 cataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccc 738  Q
    |||||||| ||||| || |||  ||||||| |||| ||||| | ||| ||||||||||||    
T  21290249 cataatttctattaatggaatatttaacatgtgccataagggcacaaattaacatttccc 21290308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 657 - 737
Target Start/End: Original strand, 13863686 - 13863767
Alignment:
Q  657 aataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccctaaggaccaagttaacatttcc 737  Q
    |||||||||||||||||||| | ||| ||||  |||||||| ||| |||||||| ||||||||||  |||||||||||||||    
T  13863686 aataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccctaaggcacaagttaacatttcc 13863767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 656 - 720
Target Start/End: Complemental strand, 28945902 - 28945837
Alignment:
Q  656 caataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaagg 720  Q
    ||||||||||||||||||||| | |||| |||||||||||| ||| ||||||||| ||||||||||    
T  28945902 caataaattaacacaatttccaatacatgatttttattagtggaattcttaacatgtgccctaagg 28945837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 637 - 697
Target Start/End: Original strand, 42709898 - 42709959
Alignment:
Q  637 taatattagattttttgaacaataaattaacac-aatttccgagacataatttttattagtg 697  Q
    |||||||| || |||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  42709898 taatattaaatattttgatcaataaattaacactaatttccgatacataatttttattagtg 42709959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 578 - 629
Target Start/End: Original strand, 30352896 - 30352947
Alignment:
Q  578 cccttggaacacaggttaagcattaaattcttgccactaatagtaagtatta 629  Q
    ||||| ||||||| |||||||||||||||||||| |||||| ||||||||||    
T  30352896 cccttagaacacatgttaagcattaaattcttgctactaatggtaagtatta 30352947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 719
Target Start/End: Original strand, 36923594 - 36923665
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaag 719  Q
    |||||| ||||||||||||||||||||| | ||||||||| ||||||| ||| |||||| || |||||||||    
T  36923594 ttttgagcaataaattaacacaatttccaatacataatttctattagtggaattcttaatatgtgccctaag 36923665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 738
Target Start/End: Original strand, 37238853 - 37238944
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccc 738  Q
    |||| ||||||||||||||||||||||| | | ||||||| ||||| | ||| ||||||||| |||||| ||| | ||||||||||||||||    
T  37238853 ttttaaacaataaattaacacaatttccaaaaaataatttctattaatggaattcttaacatgtgcccttagggcacaagttaacatttccc 37238944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 720
Target Start/End: Original strand, 50699810 - 50699875
Alignment:
Q  656 caataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaagg 720  Q
    ||||||||||||||||||||| | |||| |||| ||||||| ||| ||||||||| ||||||||||    
T  50699810 caataaattaacacaatttccaatacatgatttctattagtggaattcttaacatgtgccctaagg 50699875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 739
Target Start/End: Complemental strand, 43310430 - 43310338
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccct-aaggaccaagttaacatttccct 739  Q
    |||||| ||||||||||||||||||||| | ||| ||||| ||||||| ||| ||||||||| ||| || ||||  ||||||| |||||||||    
T  43310430 ttttgagcaataaattaacacaatttccaatacaaaatttctattagtagaattcttaacatgtgctctaaaggcacaagttagcatttccct 43310338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 779
Target Start/End: Complemental strand, 7379 - 6634
Alignment:
Q  19 gaatgggtatgagactgtaatcaaagttgcccttgtctggtactcggaatgatctaagcaaaaggtgggtgttccgaggcgatcgctgaaggtgcagttt 118  Q
    |||||| |||||||||||||||||||||||||  | ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7379 gaatggatatgagactgtaatcaaagttgccccagcctggttctcggaataatcttagcaaaaggtgggtgttccgaggcgatcgctgaaggtgcagttt 7280  T
Q  119 agcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttctacg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7279 agcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttgacaggaagtcgtgaaagaatttctacg 7180  T
Q  219 ataagttcatcaagaaggactatcagcgaggttgtagcgcagcagtttgaaggcggagactttgtcgaataagggcaattcatagtagctatgttatgta 318  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||| ||| ||||||||||||    
T  7179 ataagttcgtcaagaaggactatcagcgacgttgtagcgcagcagtttgatggcggagactttgtcgaaggagggcaattcattgtatctatgttatgta 7080  T
Q  319 tttgggtaactaaaaagaaagcagtgatgttgttgaaaactgaaatcgaaattgaaagtgtggaatcctaacctaataaacctttgcggaatttcacaat 418  Q
    ||| ||||||||||||||||||||||||   |||||||||            ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  7079 ttttggtaactaaaaagaaagcagtgat---gttgaaaac------------tgaaagtgtggaaccctaacctaataaacctctgcggaatttcacaat 6995  T
Q  419 cattatcacgaggtttctttacggaaaagtagtaagaggttaaattttgttttataccaacnnnnnnngggtttcaaacacggagacgtacttctactgg 518  Q
    ||| |||||||||||||| ||||||||   |||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||    
T  6994 catcatcacgaggtttctatacggaaa---agtaagaggttaaattttgttttataccaacaaaaaaagggtttcaaacaaggagacgtacttctactgg 6898  T
Q  519 acatcgtggata--cattcatctatttatttaatttaagggtcgtgttaaattatattatgcccttggaacacaggttaagcattaaattcttgccacta 616  Q
    ||| ||| ||||  |||  ||  || |||||||||||||||| ||| |||      || ||||||| |  |||| ||||||||||||||| ||  |||||    
T  6897 acaccgt-gatactcatggattcatctatttaatttaagggtagtgataa-----gttgtgcccttagcgcacatgttaagcattaaatttttatcacta 6804  T
Q  617 atagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacat 709  Q
    || |||||||||||||||||      |||||||| ||||||||| |||||||||||| |||||||| ||| ||||||| ||||  || ||| ||||||||    
T  6803 atggtaagtattaattgaaaaaaaattaatattatattttttgagcaataaattaacgcaatttccaagatataatttctatttatggaatccttaacat 6704  T
Q  710 atgccct-aaggaccaagttaacatttccctctnnnnnnntatactttattggattattattgatattctt 779  Q
     ||| || ||||  ||||||||||||||||| |       |||||||||||||||||||||||||| ||||    
T  6703 gtgctctaaaggcacaagttaacatttccct-ttaaaaaatatactttattggattattattgatactctt 6634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 7e-45; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 81 - 237
Target Start/End: Original strand, 19888504 - 19888660
Alignment:
Q  81 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 180  Q
    ||||| |||||||| ||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19888504 aggtgtgtgttccgcggcgaacgctgaagatggagtttggcgaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattgca 19888603  T
Q  181 tcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaagga 237  Q
    | |||||||| |||||||||||||| || || || ||||| ||||||||||| ||||    
T  19888604 taagagttttgacaggaagtcgtgacaggatatccacgatgagttcatcaaggagga 19888660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 19778879 - 19778723
Alignment:
Q  81 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 180  Q
    ||||| ||||||||  ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  19778879 aggtgtgtgttccgctgcgatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccaagatttgcaaacacatttgaattgca 19778780  T
Q  181 tcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaagga 237  Q
    | |||||||| |||||||||||||| || || |||  ||| ||||||||||| ||||    
T  19778779 taagagttttgacaggaagtcgtgacaggatgtctgtgatgagttcatcaaggagga 19778723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 637 - 735
Target Start/End: Complemental strand, 6647614 - 6647514
Alignment:
Q  637 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaacatt 734  Q
    |||||||| || |||||||||||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||    
T  6647614 taatattaaatattttgaacaataaattaacacaattttctatacataatttttattagtgaaattcttaacatatgccataaggacacaagttaacatt 6647515  T
Q  735 t 735  Q
    |    
T  6647514 t 6647514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 19351793 - 19351911
Alignment:
Q  81 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 180  Q
    ||||||||||||||  |||| || | |||||||| ||| | |||||||||||||||||| || |||||| |||||||||| || ||||||||||||||||    
T  19351793 aggtgggtgttccgtcgcgaccggtaaaggtgcaatttggtgaaggaaggatcatgagaaatcagggttgtccatgatttacaaacacatttgaattgca 19351892  T
Q  181 tcagagttttcacaggaag 199  Q
    | |||||||| ||||||||    
T  19351893 taagagttttgacaggaag 19351911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 19357181 - 19357055
Alignment:
Q  105 tgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtg 204  Q
    |||||||||| ||| | |||||||| ||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||| || ||||| || |    
T  19357181 tgaaggtgcaatttggtgaaggaagaatcatgagaaataagggttttccatgatttgcaaacgcatttgaattgcatcagagttttgacgggaagccgcg 19357082  T
Q  205 aaagaatttctacgataagttcatcaa 231  Q
    | ||||||||   ||| ||||||||||    
T  19357081 atagaatttcagtgatgagttcatcaa 19357055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 19879702 - 19879793
Alignment:
Q  141 attagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaag 232  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || |||  ||| |||||||||||    
T  19879702 attagggttttccaagatttgcaaacacatttgaattgcataagagttttgacaggaagtcgtgaaaggatgtctgtgatgagttcatcaag 19879793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 587 - 735
Target Start/End: Complemental strand, 31418198 - 31418045
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa----taatattagattttttgaacaataaattaacacaatttccgagaca 682  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||||||    |||||||| | ||||| |||||||||||||| ||||||  ||||||    
T  31418198 cacaggttaaacattaaattcttgccactggtagtaagtattaattgaaaaaattaatatta-aatttttaaacaataaattaacgcaatttttgagaca 31418100  T
Q  683 taatttttattagtgaaatc-ttaacatatgccctaaggac-caagttaacattt 735  Q
    |||||| ||||| || |||| ||||||| || | ||||| | |||||||||||||    
T  31418099 taatttctattaatggaatcattaacatgtgtcttaagggcacaagttaacattt 31418045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 637 - 736
Target Start/End: Original strand, 39854165 - 39854265
Alignment:
Q  637 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggaccaagttaacattt 735  Q
    |||||||| || |||||||||||||||||||||||||| | | ||||||||| ||||||| ||| ||||||||| ||||||||||  |||||||||||||    
T  39854165 taatattaaatattttgaacaataaattaacacaattttcaatacataatttatattagtagaattcttaacatgtgccctaaggcacaagttaacattt 39854264  T
Q  736 c 736  Q
    |    
T  39854265 c 39854265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 586 - 739
Target Start/End: Original strand, 21388032 - 21388192
Alignment:
Q  586 acacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 680  Q
    ||||| ||||||||||||||||||| || |||| |||| ||||||||||||     |||||||||| |||||||  |||||| ||||||||||| |||||    
T  21388032 acacatgttaagcattaaattcttgtcattaatggtaaatattaattgaaaaaaattaatattagaatttttgagtaataaagtaacacaattttcgaga 21388131  T
Q  681 cataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccct 739  Q
    |||||||| || || || ||| ||||| || || | ||||| | |||||||||||||||||    
T  21388132 cataatttctactaatggaatccttaagatgtgtcataagggcacaagttaacatttccct 21388192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 19721275 - 19721197
Alignment:
Q  137 agagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttct 215  Q
    |||||||||||||||| ||||||||||||||||||| | ||||||||||||||| | |||||| ||||| || ||||||    
T  19721275 agagattagggttttcaatgatttgcagacacatttcatttgcatcagagttttgaaaggaaggcgtgataggatttct 19721197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 19598578 - 19598674
Alignment:
Q  134 atgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatca 230  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||  ||||  || ||||||||   ||| || ||||| |||||||||||||||    
T  19598578 atgagagattagggttttccatgacttgcagacgcatttgaattgcacaagagaatttacaggaaggaatgataggatttcaacgataagttcatca 19598674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 649 - 739
Target Start/End: Original strand, 38073659 - 38073751
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccct 739  Q
    |||||| ||||||||||||||||||||  | ||||||||| |||||| ||||| |||||||| |||||||||| | |||||||||||||||||    
T  38073659 ttttgagcaataaattaacacaatttctaatacataatttctattagagaaatgcttaacatgtgccctaagggcacaagttaacatttccct 38073751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 620 - 739
Target Start/End: Complemental strand, 45278821 - 45278695
Alignment:
Q  620 gtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgc 713  Q
    |||||||||||||||||     |||||||||||||||||| |||||||||||| ||||||  || ||||||||| |||||||| ||| ||||| || | |    
T  45278821 gtaagtattaattgaaaaaaattaatattagattttttgagcaataaattaacgcaatttttgaaacataatttctattagtggaatccttaagatgtac 45278722  T
Q  714 cctaaggac-caagttaacatttccct 739  Q
    ||||||| | |||||||| ||||||||    
T  45278721 cctaaggtcacaagttaatatttccct 45278695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 704
Target Start/End: Complemental strand, 10679253 - 10679130
Alignment:
Q  587 cacaggttaagcattaaatt-cttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 680  Q
    |||| ||||| ||||||||| |||| || ||||| ||||||||||||||||     |||||||  ||||||||| ||||||||||||||||||| ||| |    
T  10679253 cacatgttaaacattaaatttcttgtcattaataataagtattaattgaaaaaaattaatattgaattttttgagcaataaattaacacaattttcgata 10679154  T
Q  681 cataatttttattagtgaaatctt 704  Q
    ||  |||||||||| || ||||||    
T  10679153 caatatttttattattggaatctt 10679130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 620 - 718
Target Start/End: Original strand, 38652690 - 38652788
Alignment:
Q  620 gtaagtattaattgaaataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaa 718  Q
    ||||| ||| ||||||| || |||| || |||||||||||||||||||||| ||||| | ||||||||| ||||||| ||| ||||||||| ||||||||    
T  38652690 gtaagaatttattgaaaaaaaatta-atattttgaacaataaattaacacactttccaatacataatttctattagtggaattcttaacatgtgccctaa 38652788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 585 - 738
Target Start/End: Original strand, 40211751 - 40211910
Alignment:
Q  585 aacacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa----taatattagattttttgaacaataaattaacacaatttccgaga 680  Q
    |||||| ||||||||||||  |  | ||| |||||||||| ||| |||||||    |||||||| || |||||| ||||||||||| ||||||||| | |    
T  40211751 aacacatgttaagcattaatgttattccattaatagtaagaatttattgaaaaaattaatattaaatattttgagcaataaattaagacaatttccaata 40211850  T
Q  681 cataatttttattagt-gaaatcttaacatatgccctaagga-ccaagttaacatttccc 738  Q
    ||| |||| || |||| ||| | ||||||||||| |||||||  ||||||||||||||||    
T  40211851 catgatttataatagtagaatttttaacatatgctctaaggatacaagttaacatttccc 40211910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 696
Target Start/End: Original strand, 31622750 - 31622798
Alignment:
Q  648 tttttgaacaataaattaacacaatttccgagacataatttttattagt 696  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  31622750 tttttgaacaataaattaacacaattttcgatacataatttctattagt 31622798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 739
Target Start/End: Original strand, 41888880 - 41888972
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    |||||||||||||||||||||||||| | |  ||| |||| ||||| | ||| ||||| ||| |||||||||| | |||||||||||||||||    
T  41888880 ttttgaacaataaattaacacaattttcaatgcatgatttctattattggaattcttatcatgtgccctaagggcacaagttaacatttccct 41888972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 702
Target Start/End: Original strand, 46610266 - 46610381
Alignment:
Q  592 gttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataat 686  Q
    ||||| ||||||||| ||| || ||||||||||||||||| ||||     |||||||||| |||||||   || |||||| | |||||  ||||||||||    
T  46610266 gttaaacattaaatttttgacattaatagtaagtattaatagaaaaaaattaatattagaatttttgagtgattaattaatataatttttgagacataat 46610365  T
Q  687 ttttattagtgaaatc 702  Q
    || |||||||| ||||    
T  46610366 ttctattagtggaatc 46610381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 694
Target Start/End: Complemental strand, 4020617 - 4020572
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttatta 694  Q
    ||||||| |||||||| ||| ||||||||| |||||||||||||||    
T  4020617 ttttgaaaaataaattgacataatttccgatacataatttttatta 4020572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1157 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 587 - 738
Target Start/End: Original strand, 1885 - 2043
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 681  Q
    |||| ||||||||||| ||||||||||||||| |||| ||||||||||||     |||||||||||||||| | ||||||||||||||||||| ||||||    
T  1885 cacatgttaagcattacattcttgccactaatggtaattattaattgaaaaaaactaatattagattttttaagcaataaattaacacaattttcgagac 1984  T
Q  682 ataatttttattagtgaaatc-ttaacatatgccctaaggac-caagttaacatttccc 738  Q
    ||||||| |||||||| |||| ||||||| |||||||||| | ||||||||||||||||    
T  1985 ataatttctattagtggaatcattaacatgtgccctaagggcacaagttaacatttccc 2043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 86 - 282
Target Start/End: Original strand, 18914343 - 18914536
Alignment:
Q  86 ggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcaga 185  Q
    |||||| || || ||||| |||||||||| |||  ||||||||||||   |||| |||||||||||| |||||||||| || ||||| | ||||||||||    
T  18914343 ggtgtttcgtggtgatcgatgaaggtgcaatttgacgaaggaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcaga 18914439  T
Q  186 gttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcgaggttgtagcgcagcagtttgaaggcggagactttg 282  Q
    ||||| ||||||||||| ||||| |||||| | ||||||||||||||||||| || |||||| |||| | |||||  ||||||| ||||||||||||    
T  18914440 gttttgacaggaagtcgagaaaggatttctgcaataagttcatcaagaaggattaacagcgacgttggaacgcagttgtttgaatgcggagactttg 18914536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 587 - 702
Target Start/End: Original strand, 27414071 - 27414191
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 681  Q
    |||| |||||||||||||||||||||| |||| |||||||||||||||||     |||||||||||||||||| |||||||| ||| |||||||||||||    
T  27414071 cacatgttaagcattaaattcttgccattaatggtaagtattaattgaaaaaaattaatattagattttttgagcaataaatgaacgcaatttccgagac 27414170  T
Q  682 ataatttttattagtgaaatc 702  Q
    |||||||||||||||||||||    
T  27414171 ataatttttattagtgaaatc 27414191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 84 - 252
Target Start/End: Original strand, 18909593 - 18909758
Alignment:
Q  84 tgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatca 183  Q
    ||||||||||| || ||||| |||||||||| ||| |||||| ||||||   |||| |||||||||||| |||||||||| || ||||| | ||||||||    
T  18909593 tgggtgttccgtggtgatcggtgaaggtgcaatttggcgaagaaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatca 18909689  T
Q  184 gagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcgaggttg 252  Q
    ||||||| ||||||||||||||||| |||||| |||| ||||| |||||||||| || |||||| ||||    
T  18909690 gagttttgacaggaagtcgtgaaaggatttctgcgatgagttcgtcaagaaggattaacagcgatgttg 18909758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 83 - 247
Target Start/End: Original strand, 18921488 - 18921649
Alignment:
Q  83 gtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatc 182  Q
    |||||||||||| |||||||| |||||||||| |||  ||||||||||||   |||| |||||||||||| |||||||||| || ||||| | |||||||    
T  18921488 gtgggtgttccgcggcgatcgatgaaggtgcattttgacgaaggaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatc 18921584  T
Q  183 agagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcga 247  Q
    |||||||| || ||||| |||||||| |||||| |||| || ||||||||||||| || ||||||    
T  18921585 agagtttttactggaagacgtgaaaggatttctgcgatgagctcatcaagaaggattaacagcga 18921649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 586 - 739
Target Start/End: Complemental strand, 11941644 - 11941489
Alignment:
Q  586 acacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaatttccgag 679  Q
    ||||| |||||||||||||||||||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||| |||||| ||||    
T  11941644 acacatgttaagcattaaattcttgccactaatgataagtattaattgaaaaaaaattaatattaaattttttgaacaataaattaacgcaattttcgag 11941545  T
Q  680 acataatttttattagtgaaat-cttaacatatgccct-aaggaccaagttaacatttccct 739  Q
    | |      ||||||||| ||| |||||||| |||||| ||||  |||||||||||||||||    
T  11941544 aaa------ttattagtgtaatccttaacatgtgccctaaaggcacaagttaacatttccct 11941489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 576 - 702
Target Start/End: Original strand, 44721360 - 44721491
Alignment:
Q  576 tgcccttggaacacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacaca 670  Q
    ||||||| || |||| |||||||||||||||||| |||||||| ||||| |||||||||||     ||||||||  |||||| |  |||||||||||| |    
T  44721360 tgcccttagagcacatgttaagcattaaattcttaccactaatggtaagcattaattgaaaaaaattaatattaactttttttagtaataaattaacaga 44721459  T
Q  671 atttccgagacataatttttattagtgaaatc 702  Q
    |||| ||| |||||||||||||||||||||||    
T  44721460 attttcgatacataatttttattagtgaaatc 44721491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 593 - 688
Target Start/End: Original strand, 3888767 - 3888867
Alignment:
Q  593 ttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatt 687  Q
    |||| |||||||||||||||||||||  |||||||||||| |||     |||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  3888767 ttaaacattaaattcttgccactaatgataagtattaattaaaaaaaattaatattagattttttaagcaataaattaacgcaatttccgagacataatt 3888866  T
Q  688 t 688  Q
    |    
T  3888867 t 3888867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 599 - 702
Target Start/End: Complemental strand, 19159646 - 19159538
Alignment:
Q  599 attaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttatt 693  Q
    ||||||||||| ||||||||||||||||||||||| ||     |||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| || |    
T  19159646 attaaattcttaccactaatagtaagtattaattggaaaaaattaatattagaatttttgagcaataaagtaacacaattttcgagacataatttctact 19159547  T
Q  694 agtgaaatc 702  Q
    | |||||||    
T  19159546 aatgaaatc 19159538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 594 - 691
Target Start/End: Complemental strand, 36210478 - 36210373
Alignment:
Q  594 taagcattaaattcttgccactaatagtaagtattaattgaaa--------taatattagattttttgaacaataaattaacacaatttccgagacataa 685  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||        |||||||||| ||||||| ||||||| |||||||||||  |||||||||    
T  36210478 taagcattaaattcttgccaccaatggtaagttttaattgaaaaaaaaaattaatattagaatttttgagcaataaaataacacaatttttgagacataa 36210379  T
Q  686 ttttta 691  Q
    ||||||    
T  36210378 ttttta 36210373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 637 - 738
Target Start/End: Original strand, 6590626 - 6590729
Alignment:
Q  637 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatt 734  Q
    |||||||||| ||||| | |||||||||||||||||||| || ||||||||| |||||||| ||| |||||||| || | ||||| | ||||||||||||    
T  6590626 taatattagaattttttagcaataaattaacacaatttctgaaacataatttctattagtggaatccttaacatgtgtcataagggcacaagttaacatt 6590725  T
Q  735 tccc 738  Q
    ||||    
T  6590726 tccc 6590729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 649 - 716
Target Start/End: Complemental strand, 10500396 - 10500328
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccct 716  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||    
T  10500396 ttttgagcaataaagtaacacaatttccgatacataatttttattagtggaaatattaacatgtgccct 10500328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 649 - 739
Target Start/End: Complemental strand, 32227523 - 32227431
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    |||| |||||||||| |||||||||| | | ||||||||| ||||||| ||| |||||||||||||||||||| | || ||||||||||||||    
T  32227523 ttttaaacaataaatgaacacaattttcaatacataatttctattagtagaattcttaacatatgccctaagggcacatgttaacatttccct 32227431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 637 - 736
Target Start/End: Complemental strand, 32656344 - 32656243
Alignment:
Q  637 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaacatt 734  Q
    |||||||| || |||| | |||||||||||||||| || | | |||| |||| ||||||||||| ||||||||| |||||||||| | ||||||||||||    
T  32656344 taatattaaatattttaatcaataaattaacacaagtttcaatacatgatttctattagtgaaattcttaacatgtgccctaagggcacaagttaacatt 32656245  T
Q  735 tc 736  Q
    ||    
T  32656244 tc 32656243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 621 - 704
Target Start/End: Complemental strand, 28813511 - 28813423
Alignment:
Q  621 taagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatctt 704  Q
    ||||||||||||||||     |||||||| ||| ||| | ||||||||||||| ||||||||| ||||| ||||||||| |||||||||    
T  28813511 taagtattaattgaaaaaaattaatattaaattctttaagcaataaattaacataatttccgatacatattttttattaatgaaatctt 28813423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 711
Target Start/End: Original strand, 33830307 - 33830370
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatat 711  Q
    |||||| ||||||||||||||||||||| | ||||||||| ||||||| ||| |||||||||||    
T  33830307 ttttgagcaataaattaacacaatttccaatacataatttctattagtaaaattcttaacatat 33830370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 734
Target Start/End: Complemental strand, 35310282 - 35310195
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatt 734  Q
    |||||||||||||||||||| ||||||| |  ||||||||| |||| | ||| ||||| ||| |||||||||| | ||||||||||||    
T  35310282 ttttgaacaataaattaacataatttccaatgcataattttcattattggaattcttatcatgtgccctaagggcacaagttaacatt 35310195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 697
Target Start/End: Original strand, 8333439 - 8333520
Alignment:
Q  621 taagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtg 697  Q
    ||||||||||||||||     |||||||  ||||| ||||||||||||||||||||||| ||| |||  |||| ||||||||    
T  8333439 taagtattaattgaaaaaaattaatattgaattttctgaacaataaattaacacaattttcgatacaacatttctattagtg 8333520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 720
Target Start/End: Complemental strand, 12497352 - 12497287
Alignment:
Q  656 caataaattaacacaatttccgagacataatttttattag-tgaaatcttaacatatgccctaagg 720  Q
    ||||||||||||||||||||||| |||| |||| ||||||  ||| ||||||||| || |||||||    
T  12497352 caataaattaacacaatttccgacacatgatttctattagcggaattcttaacatgtgtcctaagg 12497287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 701
Target Start/End: Complemental strand, 45075734 - 45075689
Alignment:
Q  656 caataaattaacacaatttccgagacataatttttattagtgaaat 701  Q
    ||||||||||||||||||| | | ||||||||| ||||||||||||    
T  45075734 caataaattaacacaattttcaatacataatttatattagtgaaat 45075689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 14748657 - 14748518
Alignment:
Q  97 gcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacagg 196  Q
    ||||||||||||| |||| ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||    
T  14748657 gcgatcgctgaagatgca-tttggcaaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattgcataagagttttgacagg 14748559  T
Q  197 aagtcgtga-aagaatttctacgataagttcatcaagaagga 237  Q
     |||||||| ||||||| | ||||||||||||||||| ||||    
T  14748558 gagtcgtgacaagaattcc-acgataagttcatcaaggagga 14748518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 586 - 739
Target Start/End: Complemental strand, 154343 - 154183
Alignment:
Q  586 acacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 680  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||||||     |||||||||||||||| | |||||||||||| ||||||| ||      
T  154343 acacatgttaaacattaaattcttgccactaatggtaagtattaattgaaaaaaattaatattagatttttttagcaataaattaacgcaatttctgaag 154244  T
Q  681 cataatttttattagtgaaat-cttaacatatgccct-aaggaccaagttaacatttccct 739  Q
    |||||||| |||||||| ||| |||||||| |||||| ||||  ||| |||||||||||||    
T  154243 cataatttctattagtggaatccttaacatgtgccctaaaggcgcaaattaacatttccct 154183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 587 - 674
Target Start/End: Complemental strand, 9464690 - 9464597
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaattt 674  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||||||||      |||||||| ||||||| |||| |||| |||||||||||    
T  9464690 cacatgttaagcattaaattattgccactaatggtaagtattaattgaaaaaaaattaatattaaattttttaaacattaaaataacacaattt 9464597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 720
Target Start/End: Original strand, 32785841 - 32785924
Alignment:
Q  638 aatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaagg 720  Q
    ||||||| || |||||| ||||||||||| | ||||||| | ||||||||| ||||||| ||| ||||||||| ||||||||||    
T  32785841 aatattaaatattttgagcaataaattaaaataatttccaatacataatttctattagtggaattcttaacatgtgccctaagg 32785924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 718
Target Start/End: Original strand, 33972611 - 33972748
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa--taa--tattagattttttgaacaataaattaacacaatttccgagaca 682  Q
    |||| |||||||||||| ||| | ||| |||| ||||| |||||||||||  |||  ||||| |  ||||||||||||||||||||  |||||| | |||    
T  33972611 cacatgttaagcattaatttcattccattaatggtaagaattaattgaaaaataaattattaaacattttgaacaataaattaacatcatttccaataca 33972710  T
Q  683 taattt-ttattagt-gaaatcttaacatatgccctaa 718  Q
    ||||||  ||||||| ||| ||||||||| ||||||||    
T  33972711 taatttcctattagtagaattcttaacatgtgccctaa 33972748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 587 - 666
Target Start/End: Original strand, 7269696 - 7269781
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaa 666  Q
    |||| ||||| ||||||||||||| || |||||||||||||||||| |||      |||||||| ||||||| | |||||||||||    
T  7269696 cacatgttaaacattaaattcttgtcagtaatagtaagtattaattaaaaaaaaactaatattaaattttttaagcaataaattaa 7269781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 3e-35; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 587 - 702
Target Start/End: Complemental strand, 51672869 - 51672749
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 681  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||| |||||||||||| |||||||||||||    
T  51672869 cacatgttaagcattaaattcttgccactaatggtaagtattaattgaaaaaaattaatattagattttttgagcaataaattaacgcaatttccgagac 51672770  T
Q  682 ataatttttattagtgaaatc 702  Q
    ||||||| |||||||| ||||    
T  51672769 ataatttctattagtggaatc 51672749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 592 - 738
Target Start/End: Complemental strand, 2614950 - 2614797
Alignment:
Q  592 gttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataat 686  Q
    ||||| ||||||||||||||||||||| |||| ||||| ||||||     |||||||| |||||||||  ||||||||||| |||||||  | |||||||    
T  2614950 gttaaacattaaattcttgccactaatggtaaatattatttgaaaaaaattaatattaaattttttgagaaataaattaacgcaatttcaaaaacataat 2614851  T
Q  687 ttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccc 738  Q
    |||||||| || ||| ||||||||||||||||||||| ||||||||||||||||    
T  2614850 ttttattaatggaatccttaacatatgccctaaggacacaagttaacatttccc 2614797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 587 - 735
Target Start/End: Original strand, 7648692 - 7648847
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 681  Q
    |||| |||||||||||| || |||||||||||||||||||||||||||||     |||| ||||||||||| |||||||||||||| ||||||| || ||    
T  7648692 cacatgttaagcattaactttttgccactaatagtaagtattaattgaaaaaaattaattttagattttttaaacaataaattaacgcaatttctgaaac 7648791  T
Q  682 ataatttttattagtgaaat-cttaacatatgccctaag-gaccaagttaacattt 735  Q
    ||||||| |||||||| ||| |||||||||| | ||||| |  |||||||||||||    
T  7648792 ataatttatattagtggaatccttaacatatactctaagagcacaagttaacattt 7648847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 593 - 715
Target Start/End: Original strand, 13132130 - 13132258
Alignment:
Q  593 ttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatt 687  Q
    |||||||||||||| || ||||||||  ||||||||||||||||     |||||||||||||||||  |||||||||||| |||||||||| ||||||||    
T  13132130 ttaagcattaaattattaccactaatgataagtattaattgaaaaaaattaatattagattttttgggcaataaattaacgcaatttccgaaacataatt 13132229  T
Q  688 tttattagtgaaat-cttaacatatgccc 715  Q
    | |||||||| ||| |||||||| |||||    
T  13132230 tctattagtggaatccttaacatgtgccc 13132258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 649 - 739
Target Start/End: Original strand, 3491499 - 3491591
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccct 739  Q
    |||||| |||||||||| |||||||||| | ||||||||| |||||||| ||| |||||||| |||||||||| | |||||||||||||||||    
T  3491499 ttttgagcaataaattatcacaatttccaatacataatttctattagtggaattcttaacatttgccctaagggcacaagttaacatttccct 3491591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 634 - 710
Target Start/End: Complemental strand, 49872268 - 49872191
Alignment:
Q  634 aaataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacata 710  Q
    ||||||||||| ||||||||| ||||||||||||||||||| ||| |||  ||||||||||||| ||| |||||||||    
T  49872268 aaataatattaaattttttgagcaataaattaacacaattttcgatacaacatttttattagtggaatccttaacata 49872191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 656 - 739
Target Start/End: Original strand, 8550386 - 8550471
Alignment:
Q  656 caataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    ||||||||||||||||||||| | ||||||||| ||||||| ||| |||||||||||| | || || | |||||||||||||||||    
T  8550386 caataaattaacacaatttccaatacataatttctattagtggaattcttaacatatgtcatacgggcacaagttaacatttccct 8550471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 649 - 738
Target Start/End: Original strand, 13352310 - 13352402
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttatta--gtgaaatcttaacatatgccctaaggac-caagttaacatttccc 738  Q
    |||||||||||||||||||||||||| | |  ||||||||||||||  | ||||| |||| || |||||||||| | ||||||||||||||||    
T  13352310 ttttgaacaataaattaacacaattttcaatgcataatttttattaatgggaaattttaaaatgtgccctaagggcacaagttaacatttccc 13352402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 657 - 739
Target Start/End: Complemental strand, 298279 - 298195
Alignment:
Q  657 aataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    |||||||||||||||||||| | ||| ||||  ||||||| ||| ||||||||| |||||||||| | |||||||||||||||||    
T  298279 aataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccctaagggcacaagttaacatttccct 298195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 637 - 704
Target Start/End: Complemental strand, 27211402 - 27211335
Alignment:
Q  637 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatctt 704  Q
    |||||||| | ||||| ||||||||||||||| ||||| ||| ||||||||| |||||||| ||||||    
T  27211402 taatattaaaatttttaaacaataaattaacataattttcgatacataatttctattagtggaatctt 27211335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 735
Target Start/End: Complemental strand, 50746167 - 50746016
Alignment:
Q  592 gttaagcattaaatt-cttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataa 685  Q
    ||||| ||||||||| |||| || || | |||||||||||||||||     ||||| || |||||||||| |||||||||| | ||||| ||| |||  |    
T  50746167 gttaaacattaaatttcttgtcattagtggtaagtattaattgaaaaaaattaatagtaaattttttgaataataaattaatataattttcgatacaata 50746068  T
Q  686 tttttattagtgaaat-cttaacatatgccctaaggac-caagttaacattt 735  Q
    ||| |||||||| ||| |||||||| |||| ||||||| |||||||||||||    
T  50746067 tttatattagtggaatccttaacatgtgccttaaggacacaagttaacattt 50746016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 739
Target Start/End: Original strand, 52141501 - 52141655
Alignment:
Q  592 gttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaatttccgagacataa 685  Q
    |||||||||||| ||| | |||||||| ||||||||| | |||||      |||||||| |  |||||||||||||||||||| ||||||| |  |||||    
T  52141501 gttaagcattaatttcattccactaatggtaagtatttaatgaaaaaaaattaatattaaacattttgaacaataaattaacataatttccaatgcataa 52141600  T
Q  686 tttttattagt-gaaatcttaacatatgccctaaggaccaagttaacatttccct 739  Q
    |||| |||| | ||| ||||| ||| |||| ||||   |||||||||||||||||    
T  52141601 ttttcattattggaattcttatcatgtgccttaagacacaagttaacatttccct 52141655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 704
Target Start/End: Original strand, 2692406 - 2692511
Alignment:
Q  605 ttcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaa-caataaattaacacaatttccgagacataatttttattagtga 698  Q
    |||||||||||||| |||| |||||| ||||      |||||||| ||||||| || | ||||||||||||||||| ||| | | |||||||||||||||    
T  2692406 ttcttgccactaatggtaaatattaaatgaataaaattaatattaaatttttttaagcgataaattaacacaattttcgatataaaatttttattagtga 2692505  T
Q  699 aatctt 704  Q
    ||||||    
T  2692506 aatctt 2692511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 709
Target Start/End: Complemental strand, 5198881 - 5198820
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacat 709  Q
    ||||||| |||||||||||||||||||| | ||||||||| ||||||| ||| |||||||||    
T  5198881 ttttgaataataaattaacacaatttccaatacataatttctattagtagaattcttaacat 5198820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 735
Target Start/End: Original strand, 21276636 - 21276715
Alignment:
Q  658 ataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacattt 735  Q
    ||||||||||||||||| | | ||||||||| ||||||| ||| ||||| ||| |||||||||||| |||||||| ||||    
T  21276636 ataaattaacacaattttcaatacataatttctattagtggaattcttatcatgtgccctaaggacacaagttaatattt 21276715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 43986909 - 43986972
Alignment:
Q  138 gagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtc 201  Q
    |||||||||||||||||||||||||| |  ||||||||||| | ||| | |||||| |||||||    
T  43986909 gagattagggttttccatgatttgcaaatgcatttgaattgaagcagggatttcaccggaagtc 43986972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 43907725 - 43907684
Alignment:
Q  137 agagattagggttttccatgatttgcagacacatttgaattg 178  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||    
T  43907725 agagattagggttttccatgatttgcaaacacacttgtattg 43907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 694
Target Start/End: Original strand, 48722765 - 48722810
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttatta 694  Q
    |||||| ||||| ||||||||||||||| | |||||||||||||||    
T  48722765 ttttgagcaatacattaacacaatttccaatacataatttttatta 48722810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 576 - 738
Target Start/End: Original strand, 3344873 - 3345042
Alignment:
Q  576 tgcccttggaacacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacaca 670  Q
    ||||||| || |||| ||||| ||||||||| ||||||||||| |||||||||||||||||     |||||||||||||||| | |||||||||||| ||    
T  3344873 tgcccttagagcacatgttaaacattaaatttttgccactaatggtaagtattaattgaaataaattaatattagattttttaagcaataaattaacgca 3344972  T
Q  671 atttccgagacataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttccc 738  Q
    |||||  | ||||||||| ||||| |||||| |||||||| |||||||||||| ||||||||||||||||    
T  3344973 atttctaaaacataatttctattaatgaaatccttaacatgtgccctaaggacgcaagttaacatttccc 3345042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 587 - 718
Target Start/End: Complemental strand, 2903506 - 2903368
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa------taatattagattttttgaacaataaattaacacaatttccgaga 680  Q
    |||| ||||| || |||||||||| || ||||||||||||||||| ||||      |||||||||| ||||||| ||||||||||||| |||||||||||    
T  2903506 cacacgttaaacactaaattcttgtcattaatagtaagtattaatagaaaaaaaattaatattagaatttttgagcaataaattaacataatttccgaga 2903407  T
Q  681 cataatttttattagt-gaaatcttaacatatgccctaa 718  Q
    |||||||| ||||||| ||| ||||||||| ||||||||    
T  2903406 cataatttctattagtagaattcttaacatgtgccctaa 2903368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 586 - 702
Target Start/End: Original strand, 42655922 - 42656043
Alignment:
Q  586 acacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 680  Q
    ||||| ||||| ||||||||||||| ||||||| |||||||||||||||||     |||||||||||||||||| |||||||||||  |||||| |||||    
T  42655922 acacatgttaaacattaaattcttgacactaatggtaagtattaattgaaaaaaattaatattagattttttgagcaataaattaatgcaattttcgaga 42656021  T
Q  681 cataatttttattagtgaaatc 702  Q
    |||||||| || |||| |||||    
T  42656022 cataatttctactagtaaaatc 42656043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 586 - 734
Target Start/End: Original strand, 25037262 - 25037417
Alignment:
Q  586 acacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgaga 680  Q
    ||||| ||||| ||||||||||||||||||||| |||||| ||||||||||     |||||||||||||||||| |||||||||||| |||||| ||| |    
T  25037262 acacatgttaaacattaaattcttgccactaatggtaagttttaattgaaaaaaattaatattagattttttgagcaataaattaacgcaattttcgaaa 25037361  T
Q  681 cataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatt 734  Q
     ||||||| ||| ||| |||  ||||| ||||| ||||| ||| ||||||||||||    
T  25037362 tataatttctatcagtagaatccttaatatatgtcctaatgacacaagttaacatt 25037417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 592 - 719
Target Start/End: Complemental strand, 32135956 - 32135824
Alignment:
Q  592 gttaagcattaaattcttgccactaatagtaagtattaattgaaa----taatattagattttttgaacaataaattaacacaatttccgagacataatt 687  Q
    ||||| ||||||||||||| |||||||   || ||||||||||||    |||||||||||||||||| |||||||||| | |||||| ||||||||||||    
T  32135956 gttaaacattaaattcttgtcactaatgaaaaatattaattgaaaaaattaatattagattttttgagcaataaattatcgcaatttacgagacataatt 32135857  T
Q  688 tttattagtgaaat-cttaacatatgccctaag 719  Q
    | |||||||| ||| |||||||| |||||||||    
T  32135856 tctattagtggaatccttaacatgtgccctaag 32135824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 685
Target Start/End: Complemental strand, 28085323 - 28085220
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 681  Q
    |||| ||||||||||||||| |||||| |||| |||| ||||||||||||     |||||||| ||||||| | |||||||||||| ||||||| |||||    
T  28085323 cacatgttaagcattaaatttttgccattaatggtaaatattaattgaaaaaaattaatattaaattttttaagcaataaattaacgcaatttctgagac 28085224  T
Q  682 ataa 685  Q
    ||||    
T  28085223 ataa 28085220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 593 - 686
Target Start/End: Original strand, 13789633 - 13789731
Alignment:
Q  593 ttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataat 686  Q
    ||||||||| |||||||||||| |||  ||||||||||||||||     |||||||| |||| |||| |||||||||||||||||||| || |||||||    
T  13789633 ttaagcatttaattcttgccacaaatgataagtattaattgaaaaaatttaatattaaatttattgagcaataaattaacacaatttctgatacataat 13789731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 596 - 696
Target Start/End: Complemental strand, 10333930 - 10333823
Alignment:
Q  596 agcattaaattcttgccactaatagtaagtattaattgaaa-------taatattagattttttgaacaataaattaacacaatttccgagacataattt 688  Q
    ||||||||||||||  || |||| |||||||||||||||||       |||||||| ||||||||| |||||||||||  || ||| | |||||||||||    
T  10333930 agcattaaattcttatcattaatggtaagtattaattgaaaaaaaaattaatattaaattttttgagcaataaattaatgcatttttcaagacataattt 10333831  T
Q  689 ttattagt 696  Q
    ||||||||    
T  10333830 ttattagt 10333823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 701
Target Start/End: Complemental strand, 39796096 - 39796032
Alignment:
Q  637 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat 701  Q
    |||||||| ||||||| | |||||||||||| |||||| ||| ||||||||| ||||||||||||    
T  39796096 taatattaaatttttttagcaataaattaacgcaattttcgatacataatttgtattagtgaaat 39796032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 587 - 739
Target Start/End: Original strand, 17268796 - 17268954
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa----taatattagattttttgaacaataaattaacacaatttccgagaca 682  Q
    |||| |||||||||| |||| ||||||||||| | |||||||||||||||    |||||||||||||||| ||||||||||||||||||| |||||||||    
T  17268796 cacatgttaagcattcaattattgccactaatggcaagtattaattgaaaaaattaatattagattttttaaacaataaattaacacaatctccgagaca 17268895  T
Q  683 taatttttattagt-gaaatcttaacatatgccct-aaggaccaagttaacatttccct 739  Q
    |||||| ||||| | ||| ||||||||| |||||| ||||  |||||||||||||||||    
T  17268896 taatttctattaatagaattcttaacatgtgccctaaaggttcaagttaacatttccct 17268954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 587 - 735
Target Start/End: Original strand, 52278991 - 52279146
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaataa------tattagattttttgaacaataaattaacacaatttccgaga 680  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||      ||||||||||||||| ||||||||||||||||||||  | |    
T  52278991 cacatgttaagcattaaatttttgccactaatggtaagtattaattgaaaaaaaaatagtattagattttttgagcaataaattaacacaatttcttaaa 52279090  T
Q  681 cataatttttattagtgaaatc-ttaacatatgccctaaggaccaagttaacattt 735  Q
    |||||||| ||||||||||||| ||||| | ||||| ||||  || ||||||||||    
T  52279091 cataatttctattagtgaaatcattaacttgtgcccaaaggcacacgttaacattt 52279146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 640 - 738
Target Start/End: Original strand, 26889935 - 26890035
Alignment:
Q  640 tattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccctaaggac-caagttaacatttcc 737  Q
    ||||||||||||||| |||| ||||||| |||||| ||||||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  26889935 tattagattttttgagcaattaattaacgcaattttcgagacataatttctattagtgaaatccttaacatgtgccctaaggacacaagttaacatttcc 26890034  T
Q  738 c 738  Q
    |    
T  26890035 c 26890035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 649 - 739
Target Start/End: Complemental strand, 10109307 - 10109215
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    |||||| ||||||||||||||||||| | | ||||||||| ||||||| ||| |||||| || |||||||||||| |||||||||||||||||    
T  10109307 ttttgagcaataaattaacacaattttcaatacataatttctattagtggaattcttaatatgtgccctaaggacacaagttaacatttccct 10109215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 592 - 694
Target Start/End: Original strand, 11348010 - 11348118
Alignment:
Q  592 gttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccga-gacataa 685  Q
    ||||| |||||||||||||||| |||  |||||||||||||||||     |||||||||||||||| | |||||||||||| ||||||||||  ||||||    
T  11348010 gttaaacattaaattcttgccattaacggtaagtattaattgaaaaaaattaatattagattttttaagcaataaattaacgcaatttccgataacataa 11348109  T
Q  686 tttttatta 694  Q
    ||| |||||    
T  11348110 tttctatta 11348118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 608 - 735
Target Start/End: Original strand, 32055045 - 32055179
Alignment:
Q  608 ttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatc 702  Q
    ||||||||| |||||| |||||| |||||     |||||||| ||||||| ||||||||||||||||||||| ||| ||||||||| ||||| || ||||    
T  32055045 ttgccactagtagtaaatattaaatgaaaaaaattaatattatattttttaaacaataaattaacacaattttcgatacataatttctattaatggaatc 32055144  T
Q  703 -ttaacatatgccctaaggac-caagttaacattt 735  Q
     ||||||| |||  ||||| | |||||||||||||    
T  32055145 tttaacatgtgctttaagggcacaagttaacattt 32055179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 656 - 739
Target Start/End: Original strand, 22409423 - 22409508
Alignment:
Q  656 caataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    ||||||||||||||||||||| | |||| |||| ||||||| ||| ||||||||| |||||||||| | |||||||||||||||||    
T  22409423 caataaattaacacaatttccaatacatgatttctattagtagaattcttaacatgtgccctaagggcacaagttaacatttccct 22409508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 658 - 737
Target Start/End: Original strand, 26533186 - 26533267
Alignment:
Q  658 ataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttcc 737  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||| |||| ||||| | |||||||||||||||    
T  26533186 ataaattaacacaatttccgatacataatttctattagtggaattcttaacatgtgccataagggcacaagttaacatttcc 26533267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 637 - 739
Target Start/End: Complemental strand, 51675973 - 51675870
Alignment:
Q  637 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaat-cttaacatatgccct-aaggaccaagttaacatt 734  Q
    |||||||| ||||||| |||||||||||||| |||||||||||||||||| | ||||||| |||| ||||| ||||| | | ||||  ||||||||||||    
T  51675973 taatattaaatttttt-aacaataaattaacgcaatttccgagacataatatctattagtaaaatccttaaaatatgtcataaaggcacaagttaacatt 51675875  T
Q  735 tccct 739  Q
    |||||    
T  51675874 tccct 51675870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 739
Target Start/End: Complemental strand, 32318603 - 32318512
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    |||||||||||||||||||||||||| | | ||||||||| ||||| ||||| ||||||||| ||  |||||| | |||||||||||||||||    
T  32318603 ttttgaacaataaattaacacaattttcaatacataatttctattaatgaaattcttaacatgtg-gctaagggcacaagttaacatttccct 32318512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 636
Target Start/End: Original strand, 26889583 - 26889632
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa 636  Q
    |||| |||||||||||||||||||| |||||| |||||| ||||||||||    
T  26889583 cacatgttaagcattaaattcttgctactaatggtaagtgttaattgaaa 26889632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 736
Target Start/End: Original strand, 4960442 - 4960534
Alignment:
Q  650 tttgaacaataaattaacacaatttccgagacataatttttattagtgaaa-----tcttaacatatgccctaaggac-caagttaacatttc 736  Q
    ||||| ||||||||||||||||||| | | || |||||| |||||||| ||     ||||||||| |||||||||||| ||||||||||||||    
T  4960442 tttgagcaataaattaacacaattttcaatacgtaatttctattagtggaattcattcttaacatgtgccctaaggacacaagttaacatttc 4960534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 738
Target Start/End: Original strand, 14136633 - 14136739
Alignment:
Q  634 aaataatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaac 731  Q
    ||||||||||| || | |||| ||||||||||| | ||||||| | |||| |||| ||||||| ||| ||||||||||| || ||||| | ||||||| |    
T  14136633 aaataatattaaatatgttgagcaataaattaatataatttccaatacatgatttctattagtagaattcttaacatataccttaagggcacaagttagc 14136732  T
Q  732 atttccc 738  Q
    |||||||    
T  14136733 atttccc 14136739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 722
Target Start/End: Original strand, 20574954 - 20575020
Alignment:
Q  657 aataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac 722  Q
    |||||||||||||||||||| | ||| |||| |||||| | ||| ||||||||| ||||||||||||    
T  20574954 aataaattaacacaatttccaatacacaattattattaatggaattcttaacatgtgccctaaggac 20575020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 709
Target Start/End: Original strand, 24010275 - 24010336
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacat 709  Q
    ||||| |||||||||||||||||||| | | ||||||||| ||||||| ||| |||||||||    
T  24010275 ttttggacaataaattaacacaattttcaatacataatttctattagtggaattcttaacat 24010336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 587 - 739
Target Start/End: Complemental strand, 17867597 - 17867438
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagac 681  Q
    |||||||||||||||||||||||| || |||| |||||||||||||||||     |||||||| ||||||| |  |||||||||||||||||||||| ||    
T  17867597 cacaggttaagcattaaattcttgtcattaatggtaagtattaattgaaaaaaaataatattaaattttttaagtaataaattaacacaatttccgatac 17867498  T
Q  682 ataatttttattagtgaaa-tcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    ||||||| ||||| ||||| ||||||||| |||| ||||||| ||| |||||||||||||    
T  17867497 ataatttctattaatgaaattcttaacatgtgccttaaggacacaaattaacatttccct 17867438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 572 - 696
Target Start/End: Complemental strand, 24991898 - 24991769
Alignment:
Q  572 attatgcccttggaacacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaa 666  Q
    ||||||||||| |  |||| ||||| |||||||||||||||| ||||||||||||||||||||||     |||||||| |||||||||||||||||||||    
T  24991898 attatgcccttagggcacatgttaaacattaaattcttgccattaatagtaagtattaattgaaaaaaattaatattaaattttttgaacaataaattaa 24991799  T
Q  667 cacaatttccgagacataatttttattagt 696  Q
    | || ||||||||||||||||| |||||||    
T  24991798 cgcagtttccgagacataatttctattagt 24991769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 640 - 739
Target Start/End: Complemental strand, 2539931 - 2539831
Alignment:
Q  640 tattagattttttgaacaataaattaacacaatttccgagacataatttttattagtgaaatcttaacatatgccctaaggac-caagttaacatttccc 738  Q
    ||||||||||||||| |||||||||||  |||||| ||||||||||||| ||||| | |||||||||||| |||| ||||| | ||||||||||||||||    
T  2539931 tattagattttttgagcaataaattaatgcaattttcgagacataatttctattaataaaatcttaacatgtgccataagggcacaagttaacatttccc 2539832  T
Q  739 t 739  Q
    |    
T  2539831 t 2539831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 637 - 694
Target Start/End: Complemental strand, 31451364 - 31451307
Alignment:
Q  637 taatattagattttttgaacaataaattaacacaatttccgagacataatttttatta 694  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||    
T  31451364 taatattagattttttgaacaataaattaacaaaatttccaagacataatttctatta 31451307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 598 - 694
Target Start/End: Complemental strand, 38730316 - 38730215
Alignment:
Q  598 cattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttccgagacataatttttat 692  Q
    ||||||||||||| || |||| |||||||||||||||||     |||||||| |||||||||||||||||||||| |||||| ||| | ||||||| |||    
T  38730316 cattaaattcttgtcattaatggtaagtattaattgaaaaaaattaatattaaattttttgaacaataaattaacgcaattttcgacatataatttctat 38730217  T
Q  693 ta 694  Q
    ||    
T  38730216 ta 38730215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 587 - 688
Target Start/End: Complemental strand, 40037614 - 40037507
Alignment:
Q  587 cacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa-------taatattagattttttgaacaataaattaacacaatttccgag 679  Q
    |||| |||||||||||||||||||||| ||||  ||||||||||||||||       |||||||||||||||||| ||| |||||||| || |||| |||    
T  40037614 cacatgttaagcattaaattcttgccattaatgataagtattaattgaaaaaaaaattaatattagattttttgagcaa-aaattaactcagtttctgag 40037516  T
Q  680 acataattt 688  Q
    |||||||||    
T  40037515 acataattt 40037507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 578 - 636
Target Start/End: Complemental strand, 2540275 - 2540217
Alignment:
Q  578 cccttggaacacaggttaagcattaaattcttgccactaatagtaagtattaattgaaa 636  Q
    ||||| ||||||| ||||||||||||||||||| || |||| |||||||||||||||||    
T  2540275 cccttagaacacatgttaagcattaaattcttgtcagtaatggtaagtattaattgaaa 2540217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 42693706 - 42693665
Alignment:
Q  137 agagattagggttttccatgatttgcagacacatttgaattg 178  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  42693706 agagattagagttttccatgatttgcagacacatttgaattg 42693665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 598 - 675
Target Start/End: Complemental strand, 3447511 - 3447429
Alignment:
Q  598 cattaaattcttgccactaatagtaagtattaattgaaa-----taatattagattttttgaacaataaattaacacaatttc 675  Q
    ||||||||||||| || ||||  ||| ||||||||||||     |||||||||||||||||| ||||||||||||| ||||||    
T  3447511 cattaaattcttgtcattaatgataaatattaattgaaaaaaattaatattagattttttgagcaataaattaacataatttc 3447429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 656 - 736
Target Start/End: Complemental strand, 11257936 - 11257854
Alignment:
Q  656 caataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttc 736  Q
    |||||||||||||||||||   | ||||||||| ||||||| ||| ||||||||| |||||||||| | ||||||||||||||    
T  11257936 caataaattaacacaatttataatacataatttctattagtggaattcttaacatgtgccctaagggcacaagttaacatttc 11257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 657 - 737
Target Start/End: Original strand, 37456109 - 37456191
Alignment:
Q  657 aataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttcc 737  Q
    |||||||||||||||||||| | ||||||||| ||||||| ||| ||||||||  |||||||||| | ||||||| |||||||    
T  37456109 aataaattaacacaatttccaatacataatttctattagtggaattcttaacacgtgccctaagggcacaagttagcatttcc 37456191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 736
Target Start/End: Complemental strand, 41128226 - 41128125
Alignment:
Q  637 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatt 734  Q
    |||||||| || |||||| ||||||||||||| ||||| | | ||||||||| ||||||| ||| |||||| || |||||| ||| | ||||||||||||    
T  41128226 taatattaaatattttgagcaataaattaacataattttcaatacataatttatattagtggaattcttaatatgtgcccttagggcgcaagttaacatt 41128127  T
Q  735 tc 736  Q
    ||    
T  41128126 tc 41128125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 720
Target Start/End: Original strand, 7107518 - 7107590
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaagg 720  Q
    |||||| ||||||||| ||||||||||| | ||||||||| ||||||| ||| ||||||||| |||| |||||    
T  7107518 ttttgagcaataaatttacacaatttccaatacataatttctattagtggaattcttaacatgtgccataagg 7107590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 716
Target Start/End: Original strand, 8072526 - 8072594
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccct 716  Q
    |||||||| ||||||||||||||||| | | ||||||||| ||||||| ||| ||||||||| ||||||    
T  8072526 ttttgaaccataaattaacacaattttcaatacataatttctattagtggaattcttaacatgtgccct 8072594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 657 - 739
Target Start/End: Original strand, 30069797 - 30069881
Alignment:
Q  657 aataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatttccct 739  Q
    |||||||||||||||||||| | ||| ||||  ||||||| ||| ||||||||| |||| ||||| | |||||||||||||||||    
T  30069797 aataaattaacacaatttccaatacacaattactattagtggaattcttaacatgtgccttaagggcacaagttaacatttccct 30069881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 701
Target Start/End: Original strand, 1042800 - 1042845
Alignment:
Q  656 caataaattaacacaatttccgagacataatttttattagtgaaat 701  Q
    ||||||||||||||||||| | | ||||||||| ||||||||||||    
T  1042800 caataaattaacacaattttcaatacataatttctattagtgaaat 1042845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 709
Target Start/End: Complemental strand, 16037368 - 16037307
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacat 709  Q
    |||||| ||||||||||| ||||||||||| ||||||||| ||| ||| ||| |||||||||    
T  16037368 ttttgaccaataaattaatacaatttccgatacataatttctatcagtggaattcttaacat 16037307  T

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Target: scaffold0154 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 637 - 739
Target Start/End: Original strand, 36407 - 36511
Alignment:
Q  637 taatattagattttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccctaaggac-caagttaacatt 734  Q
    |||||||| || ||||||  |||||||||||||||||||| | ||||||||| ||||||| ||| ||||||||| |||  ||||| | ||||||||||||    
T  36407 taatattaaatattttgagaaataaattaacacaatttccaatacataatttctattagtggaattcttaacatgtgctttaagggcacaagttaacatt 36506  T
Q  735 tccct 739  Q
    |||||    
T  36507 tccct 36511  T

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Target: scaffold0524 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 694
Target Start/End: Original strand, 1494 - 1539
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttatta 694  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||    
T  1494 ttttgagcaataaattaacacaatttccgatacataatttctatta 1539  T

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Target: scaffold0102 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 735
Target Start/End: Complemental strand, 21321 - 21233
Alignment:
Q  649 ttttgaacaataaattaacacaatttccgagacataatttttattagt-gaaatcttaacatatgccct-aaggaccaagttaacattt 735  Q
    ||||||| |||||||||||||||||||| | | ||||||||||||| | ||| ||||||||| || ||| ||||  |||||||||||||    
T  21321 ttttgaataataaattaacacaatttccaatatataatttttattattggaattcttaacatgtgtcctaaaggcacaagttaacattt 21233  T

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