View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_high_30 (Length: 348)
Name: NF19828_high_30
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 47308352 - 47308671
Alignment:
| Q |
14 |
attattctaaaaaggcttaaaattggtttttgttaatgtcctgcatgtaagcatcatgcatctcttcaatttttaagcagtttatttgttgtggtcctgt |
113 |
Q |
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| T |
47308352 |
attattttaaaaaggcttaaaattggtttttgttaatgtcctgcacgtaagtatcatgcatctcttcaattattaagcagtttatttgttgtggtcctgt |
47308451 |
T |
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| Q |
114 |
tggcaactgctctgttgaaacaaacatgtaacacatggtttttattggaatatgtagtttgtcactttctcttggcatgtgtagagtatattatattata |
213 |
Q |
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| T |
47308452 |
tggcaactgctctgttgaaacaaacatgtaacacatggtttttattggaatatgtagtttgtcactttctcttggcatgtgtagagtatattatattata |
47308551 |
T |
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| Q |
214 |
aacaaacactgtattaaactcaatattctattagctgcatacttcattgtgctagaaggtttggtttattggccgctgtgataactttgtttttcttaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
47308552 |
aacaaacactgtattaaactcaatattctattagctgcatacttcattgtgctagaaggcttggtttattggccgttgtgataactttgtttttcttaat |
47308651 |
T |
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| Q |
314 |
taataaacagggtgctagat |
333 |
Q |
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|||||||||||||||||||| |
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| T |
47308652 |
taataaacagggtgctagat |
47308671 |
T |
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