View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_high_31 (Length: 339)
Name: NF19828_high_31
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 322
Target Start/End: Original strand, 45758630 - 45758950
Alignment:
| Q |
10 |
aataatatatggttgagaaatatgaccaagaaattttttgtgaaggttacttnnnnnnnnnnnnnnn---cttttgtgaagactgaacaatttagtgtac |
106 |
Q |
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| T |
45758630 |
aataatatatggttgagaaatatgaccaagaaattttttgtgaaggttacataaaaaaaaaaaaaaaaaacttttgtgaagactgaacaatttagtgtac |
45758729 |
T |
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| Q |
107 |
tttattnnnnnnnn-----gtgagtcatgatttattttgatcttttttcatcgttttaagagtttcggtaaggatcattggcatgagaaatcaaatgcag |
201 |
Q |
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| T |
45758730 |
ttcattaaaaaaaaaaaaagtgagtcatgatttattttgatcttttttcatcattttaagagtttgggtaaggatcattggcatgagaaatcaaatgcag |
45758829 |
T |
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| Q |
202 |
atatttaagcaaccccaagagttaaactttgtgctctaaactctaaattggaaatcctaacgcatacatgcaaaaacaatttccactctgcaatattcaa |
301 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45758830 |
atatttaagcaacctcaagagttaaactttgtgctctaaactctaaattggaaatcctaacgcatacatgcaaaaacaatttccaccctgcaatattcaa |
45758929 |
T |
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| Q |
302 |
agatgatcccaagttcacaac |
322 |
Q |
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| T |
45758930 |
agatgatcccaagttcacaac |
45758950 |
T |
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