View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_high_32 (Length: 334)
Name: NF19828_high_32
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_32 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 47599746 - 47599429
Alignment:
| Q |
17 |
ttctaagacagccaccgcacatgaattcatcaaattaagagctctgtcgtcatttggcttcacaaattcatgtatctcagaaaatctatggaagtggcat |
116 |
Q |
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| T |
47599746 |
ttctaagacagccaccgcacatgaattcatcaaattaagagctctgtcgtcatttggcttcacaaattcatgtatctcagaaaatctatggaagtggcat |
47599647 |
T |
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| Q |
117 |
ccatctatccgaactacaacccatgtagacggcatcaacttgctatcaaactcaaaggacctcacatactccggctttacattgttaatctcctccgcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47599646 |
ccatctatccgaactacaacccatgtagacggcatcaacttgctatcaaactcaaaggacctcacatactccggctttacattgttaatctcctccgcaa |
47599547 |
T |
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| Q |
217 |
aaacaccaagctccttcaaaagaatagtttgttcgttccaaaatcttgtgcttgctattttcttatagtgcactgtgtttatctttctcctttttctttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47599546 |
aaacaccaagctccttcaaaagaatagtttgttcgttccaaaatcttgtgcttgctattttcttgtagtgcactgtgtttatctttctcctttttctttc |
47599447 |
T |
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| Q |
317 |
aaccggagcaccatcttc |
334 |
Q |
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|||||||||||||||||| |
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| T |
47599446 |
aaccggagcaccatcttc |
47599429 |
T |
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