View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_high_40 (Length: 270)
Name: NF19828_high_40
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_40 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 21748880 - 21748625
Alignment:
| Q |
1 |
atgagtatcaatcaatggcaacaaacatgaaagcacacaaatagccggatatagtccagtataaactcgttacggcagaacagaacaactaaaattactt |
100 |
Q |
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| T |
21748880 |
atgagtatcaatcaatggcaacaaacatgaaagcacacaaatagccggatatagtccagtataaactcgttacggcataacagaacaactaaaattactt |
21748781 |
T |
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| Q |
101 |
ggtaaagattaaagacaaccaatatttgcttataattagagacgagtaaataaatgggcatcaagaaatgcaaactcatttctgtaacatctatcgcaat |
200 |
Q |
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| T |
21748780 |
ggtaaagattaaagacaaccaatatttgcttataattagagacgagtaaataaatgggcatcaagaaatgcaaactcacttttgtaacatctatcgcaat |
21748681 |
T |
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| Q |
201 |
tccagacctttcaatcaaaacggtatcaa--cactcactacgaacacccaagaaac |
254 |
Q |
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| T |
21748680 |
tccagacctttcaatcaaaacggtatcaactcactcactacaaacacccaagaaac |
21748625 |
T |
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Target: scaffold0430 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12014 - 12058
Alignment:
| Q |
1 |
atgagtatcaatcaatggcaacaaacatgaaagcacacaaatagc |
45 |
Q |
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| T |
12014 |
atgagtatcaatcaatggtaacaaacatgaaagcacacaaatagc |
12058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 46938308 - 46938351
Alignment:
| Q |
171 |
caaactcatttctgtaacatctatcgcaattccagacctttcaa |
214 |
Q |
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| T |
46938308 |
caaactcacttctgtaacatctttggcaattccagacctttcaa |
46938351 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 861378 - 861338
Alignment:
| Q |
172 |
aaactcatttctgtaacatctatcgcaattccagacctttc |
212 |
Q |
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| T |
861378 |
aaactcacttctgtaacatctttagcaattccagacctttc |
861338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 3314666 - 3314626
Alignment:
| Q |
2 |
tgagtatcaatcaatggcaacaaacatgaaagcacacaaat |
42 |
Q |
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| T |
3314666 |
tgagtatcaatcaatggtaacaaacatgaaaacacataaat |
3314626 |
T |
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