View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_high_43 (Length: 264)
Name: NF19828_high_43
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 47827403 - 47827138
Alignment:
| Q |
1 |
aaaatatatataaaaccctatttttctagctataaaccacctccaaggattattattat---gaagtgacatattatataattccaaattaaatgttaaa |
97 |
Q |
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| T |
47827403 |
aaaatatatataaaaccctatttttctagctataaaccacctccaaggattattattattatgaagtgacatattatataattccaaattaaatgttaaa |
47827304 |
T |
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| Q |
98 |
aagttcaggcttcatacgaatttatattgcttaaattttgcatgcatgcaactcatcatgtcaacatgtacaactaattaaatttatcttataagagagt |
197 |
Q |
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| T |
47827303 |
aa-ttcaggcttcatacgaatttatattgcttaaattttgcatgcatgcaactcatcatgtcaacatgtacaactaattaaatttatcttataagagagt |
47827205 |
T |
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| Q |
198 |
atatatgtcttacatttttgaaagtaggtaagccgtgataatcctggaatagagcgagttctttaaa |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47827204 |
atatatgtcttacatttttgaaagtaggtaagccgtgataatcctggaatagagcgagttctttaaa |
47827138 |
T |
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