View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19828_high_5 (Length: 539)
Name: NF19828_high_5
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 529
Target Start/End: Complemental strand, 7613378 - 7612869
Alignment:
| Q |
17 |
catgttgaacatgatcaacccaacataagagtaacaatgttgaagcagtttacaaacaaagttcgtcttaaacattggcacaatttctgcttaattttaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7613378 |
catgttgaacatgatcaacccaacataagagtaacaatgttgaagcagtttacaaacaaagttcgtcttaaacattggcacaatttctgcttaattttaa |
7613279 |
T |
|
| Q |
117 |
aaatgccgccacatctaaagttaagtaaaaaatttgaaaactgttacatacaaatccgtcttaaacaatgacaccatttcctcttaattttaaaaatctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7613278 |
aaatgccgccacatctaaagttaagtaaaaaatttgaaaactgttacatacaaatccgtcttaaacaatgaccccatttcctcttaattttaaaaatctt |
7613179 |
T |
|
| Q |
217 |
actgtatccatgacnnnnnnnnaatagggaaccaaaatcgcaactaattatggagggccgagctaacaagtttctttttctacttccctnnnnnnnngtt |
316 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7613178 |
actgtatccatga-ttttttttaatagggaaccaaaatcgcaactaattatggagggccgagctaacaagtttctttttctacttccctaaaaaaaagtt |
7613080 |
T |
|
| Q |
317 |
tctttttcaattagtac-nnnnnnnggagggatacttgctagtaatatttttgtatagaattttaaataagcattttatgcacatttcaagatcccaacc |
415 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
7613079 |
tctttttcaattagtacttttttttggagggatatgtgctagtaatatttttgtatagaattttaaataagcattttatgcacaatccaagatcccaacc |
7612980 |
T |
|
| Q |
416 |
caatgcaccgatgaccggcttggtttaggtcaacttggagtttataaattattgaaagccctaatccaatattcaccgaactccacaataaccctattcc |
515 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
7612979 |
caatgcaccgatgaccg---tggtttaggtcaacttggagtttataaattactgaaagccctaattcaatattcaccgaactccacaataaccctaatcc |
7612883 |
T |
|
| Q |
516 |
tttcggctttcatc |
529 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7612882 |
tttcggctttcatc |
7612869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University