View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_high_53 (Length: 238)
Name: NF19828_high_53
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48838432 - 48838211
Alignment:
| Q |
1 |
agatgaataacagttgtctattgtgagtgaatcatttcaatagacaagattgaaatgaaaccatttacaataatactgacagaataataaaattctttat |
100 |
Q |
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| T |
48838432 |
agatgaaaaacagttgtctattgtgagtgaatcatttcaatagacaagattgaaatgaaaccatttacaataatacagacagaataataaaattctttat |
48838333 |
T |
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| Q |
101 |
ctgtaacaaacaaacaaccaaatcagaacaagaattataatataatactttgatgggaataagagtttacaatacatacaggttgaagtaggaggagaca |
200 |
Q |
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| T |
48838332 |
ccgtaacaaacaaacaaccaaatcagaacaagacttataatataatactttgatgggaataagagtttacaatacatacaggttgaagtaggaggagaca |
48838233 |
T |
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| Q |
201 |
tcaccaatgtcaaaattggaca |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
48838232 |
tcaccaatgtcaaaattggaca |
48838211 |
T |
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