View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19828_high_8 (Length: 485)
Name: NF19828_high_8
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 33991762 - 33991307
Alignment:
| Q |
13 |
aatatgagactcttaacggaggtgagctatgtaggagttgagcggagtgggttagaggctcatagcaagtgtcagtacccttgggccaactccgaacaac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33991762 |
aatatgagactcttaacggaggtgagctatgtaggagttgagcggagtgggttagaggctcatagcaagtgtcagtacccttgggccaactccgaacaac |
33991663 |
T |
|
| Q |
113 |
tnnnnnnnntagcttcatgaatagagatttaatgcaaaagaaaaatcaatcaaaaagcataagggttgacattactgcttttaattaacttagcaagcta |
212 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33991662 |
taaaaaaaatagcttcatgaatagagatttaatgcaaaaaaaaaatcaatctaaaagcataagggttgacattactgcttttaattaacttagcaagcta |
33991563 |
T |
|
| Q |
213 |
agaaccaaagcagaattgtacctttgcaattacagggcgagctattgcagttccaagcaaatacttcctctcataaattgcaccggcacgcaggcaaggg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33991562 |
agaaccaaagcagaattgtacctttgcaattacagggcgagctattgcagttccaagcaaatacttcctctcataaattgcaccggcacgcaggcaaggg |
33991463 |
T |
|
| Q |
313 |
aatacataatccctaacaaattcctccttcaaatccttcacgactaactgagaagctccgctggcttttgccttctcttctaaaccttccaattcacttg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33991462 |
aatacataatccctaacaaattcctccttcaaatccttcacgactaactgagaagctccgctggcttttgccttctcttctaaaccttccaattcacttg |
33991363 |
T |
|
| Q |
413 |
ccccctaagaaaatttgcatttgttaatcaagcatgcagcaattaaagtaaatgac |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33991362 |
ccccctaagaaaatttgcatttgttaatcaagcatgcagcaattaaagtaaatgac |
33991307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 230 - 407
Target Start/End: Original strand, 42867826 - 42868003
Alignment:
| Q |
230 |
gtacctttgcaattacagggcgagctattgcagttccaagcaaatacttcctctcataaattgcaccggcacgcaggcaagggaatacataatccctaac |
329 |
Q |
| |
|
||||||||||||||||||| || || |||| || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
42867826 |
gtacctttgcaattacaggacgggccattgaggtcccaagcaaatacttcctctcataaatggcaccagcacgcaggcaaggaaatacgtaatctttaac |
42867925 |
T |
|
| Q |
330 |
aaattcctccttcaaatccttcacgactaactgagaagctccgctggcttttgccttctcttctaaaccttccaattc |
407 |
Q |
| |
|
||||||||||||||| ||||| |||||||| || || ||||| ||||||||||| || |||| ||||| |||||||| |
|
|
| T |
42867926 |
aaattcctccttcaagtcctttacgactaattgggaggctccactggcttttgctttggcttccaaaccatccaattc |
42868003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 230 - 407
Target Start/End: Original strand, 18854669 - 18854846
Alignment:
| Q |
230 |
gtacctttgcaattacagggcgagctattgcagttccaagcaaatacttcctctcataaattgcaccggcacgcaggcaagggaatacataatccctaac |
329 |
Q |
| |
|
||||||||||||||||||| || || |||| || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
18854669 |
gtacctttgcaattacaggacgtgccattgaggtcccaagcaaatacttcctctcataaatagcaccagcacgcaggcaaggaaatacgtaatctttaac |
18854768 |
T |
|
| Q |
330 |
aaattcctccttcaaatccttcacgactaactgagaagctccgctggcttttgccttctcttctaaaccttccaattc |
407 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||| || || |||| ||| || || |||||||||| |||||||| |
|
|
| T |
18854769 |
aaattcctccttcaagtcctttacgactaattgagatgccccactggatttggctttagcttctaaaccgtccaattc |
18854846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University