View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_10 (Length: 512)
Name: NF19828_low_10
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Original strand, 41980385 - 41980870
Alignment:
| Q |
12 |
cagagacagtaacaagcttaatccccaaaacattactactcaaatttttcacagtataatgccaagtaaaagcagcaaaacttcccacttctttgtaaat |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41980385 |
cagaaacagtaacaagcttaatccccaaaacattactactcaaatttttcacagtataatgccaagtaaaagcagcaaaacttcccacttctttgtaaat |
41980484 |
T |
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| Q |
112 |
atcgactcttgttacattgtttccattgataaacacatcaaaaactctctctccttcttttttcacactcgaatcaatctccgcgaaatgcagccacacc |
211 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41980485 |
atcaactcttgttacattgtttccattgataaacacatcaaaaactctctctccttcttttttcacactcgaatcaatctccgcgaaatgcagccacacc |
41980584 |
T |
|
| Q |
212 |
atatagtccatcttcgcgtccacactcaattcgtactccaatgtctcctcctccgtcgtcaccgccgtttggtaaagcttcatcggaaaataattcggct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41980585 |
atatagtccatcttcgcgtccacactcaattcgtactccaatgtctcctcctccgtcgtcaccgccgtttggtaaagcttcatcggaaaataattcggct |
41980684 |
T |
|
| Q |
312 |
ccttttcagtaccattcacggtattctccgttgataaaactctgactatttcttcaggttcggttcggaatgcttcatccggctgccatgaccggccgaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41980685 |
ccttttcagtaccattcacggtattctccgttgataaaactctgactatttcttcaggttcggttcggaatgtttcatccggctgccatgaccggccgaa |
41980784 |
T |
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| Q |
412 |
tttatcagtatcgttggtgaagccagcgccccaatgatcaccggagccgcatgaaactctaccgtagttaacgagaatgaagtttt |
497 |
Q |
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| T |
41980785 |
tttatcagtatcgttggtgaagccagcgccccaatgatcaccggagccgcatgaaactctaccgtagttaacgagaatgaagtttt |
41980870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 22084465 - 22084350
Alignment:
| Q |
47 |
ctactcaaatttttcacagtataatgccaagtaaaagcagcaaaacttcccacttctttgtaaatatcgactcttgttacattgtttccattgataaaca |
146 |
Q |
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||||||||||| ||||| |||| |||||||||||| ||||| |||| || |||| |||||||||||| ||||| || | ||| | |||||||| |||| |
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| T |
22084465 |
ctactcaaattcttcactgtatgatgccaagtaaacgcagctaaacccccaacttgtttgtaaatatctactctagtcaaattatcaccattgatgaaca |
22084366 |
T |
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| Q |
147 |
catcaaaaactctctc |
162 |
Q |
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||||||| || ||||| |
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| T |
22084365 |
catcaaacaccctctc |
22084350 |
T |
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