View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19828_low_11 (Length: 492)
Name: NF19828_low_11
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 39979250 - 39979623
Alignment:
| Q |
1 |
agacctgataggtgaggaggtagttgagcatggtaaatgaaatttaatttctttgcagagcttgctagtcttgctgtcatcatatcagacacattactac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39979250 |
agacctgataggtgaggaggtagttgagcatggtaaatgatatttaatttctttgcagagcttgctagtcttgctgtcatcatatcagacacattactac |
39979349 |
T |
|
| Q |
101 |
caaagacagtatatataaagtacnnnnnnnncttcaaactggcgtannnnnnnnatattaactctttgttctcgac-gaaaaaggaccatggtaatctga |
199 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||||||| |
|
|
| T |
39979350 |
caaagacagtatatataaagtacttttttttcttcaaactggcgtattttttttatattaactctttgttctcaaccggaaaaggaccatggtaatctga |
39979449 |
T |
|
| Q |
200 |
aattcgactgtgtggtaagtaagattagtcaagaattattctacacaaaaatcgaactcaagttcatttgaactatttgtttttggtgtagttcattaat |
299 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
39979450 |
aatttgactgtgtggtaagtaagtttagtcaagaattattctacacaaaaatcgaactcaagttcatttgaactattcgtttttggtgtagtttattaat |
39979549 |
T |
|
| Q |
300 |
cacttatctgattaacttaactcgcgtatatacacacacgtatgtataacttttaaaagagactgatgaatggga |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39979550 |
cacttatctgattaacttaactcgcgtatatatacacacgtatgtataa-ttttaaaagagactgatgaatggga |
39979623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 370 - 477
Target Start/End: Original strand, 39979782 - 39979889
Alignment:
| Q |
370 |
tgggatccaccgtgtccaggaggtgccctcaacaaagaccgagccatatccttttaggttgatcaatagatacaagttgcaattactcctcctattgggc |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39979782 |
tgggatccaccgtgtccaggaggtgccctcaacaaagaccgagccatatccttttaggttgatcaatagatacaagttgcaattactcctcctattgggc |
39979881 |
T |
|
| Q |
470 |
aatatatt |
477 |
Q |
| |
|
|||||||| |
|
|
| T |
39979882 |
aatatatt |
39979889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 29610354 - 29610390
Alignment:
| Q |
228 |
tcaagaattattctacacaaaaatcgaactcaagttc |
264 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29610354 |
tcaagaattattgcacacaaaaatcgaactcaagttc |
29610390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University