View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_12 (Length: 486)
Name: NF19828_low_12
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 31795654 - 31795229
Alignment:
| Q |
18 |
tttactaggccccatataatcaccaatttgatgccaatatcatgtgccctcaaagtcacatatcatagaggcatgaaattcatttacatgttcatataaa |
117 |
Q |
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| T |
31795654 |
tttactaggccccatataatcaccaatttgatgccaatatcatgtgccctcaaagtcacatatcatagaggcatgaaattcatttacatgttcatataaa |
31795555 |
T |
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| Q |
118 |
tctaggtttc--------nnnnnnnncttggtgtatatgtttacctcaatcattctttcatgcacttcccaggagaaatataaattagcacacgaaaacc |
209 |
Q |
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|||||||||| |||||||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
31795554 |
tctaggtttcaaaaaaaaaaaaaaaacttggtgtatatatttacctcaatcgttctttcatgcactttccatgagaaatataaattagcacacgaaaacc |
31795455 |
T |
|
| Q |
210 |
ttcaatgcctaacnnnnnnnnnnnnnnnnnnnnnggtttcaaagagcc------tagttgcgaaactcacatatactaaatgagaagaaaatgagtattg |
303 |
Q |
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||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
31795454 |
ttcaatgcctaac-ttttttttcattctttttttggtttcaaagagcctagtgctagtggcgaaactcacatatattaaatgagaagaaaatgagtattg |
31795356 |
T |
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| Q |
304 |
tgggtttgaacatacaccccgacattcatatttctccccaaccttttataatttgaggtgcacttacgttaaaacatccaacnnnnnnnatattgttcta |
403 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
31795355 |
tgggtttgaacatacaccccggcattcatatttctccccaaccttttataatttgaggtgcacttacgttaaaacatccaactttttttatattcttcta |
31795256 |
T |
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| Q |
404 |
ccttttcaactttattagcatttggta |
430 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31795255 |
ccttttcaactttattagcatttggta |
31795229 |
T |
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