View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_15 (Length: 465)
Name: NF19828_low_15
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 35501448 - 35500991
Alignment:
| Q |
1 |
tgttttcttatgtttgttcctttgattaacattttgacagatatagatattaatgactgggacttagattggcatcacatatcatttcttatgttgatat |
100 |
Q |
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| T |
35501448 |
tgttttcttatgtttgttcctttgactaacattttgacagatatagatattaatgactgggacttagattggcatcacatatcatttcttatgttgatat |
35501349 |
T |
|
| Q |
101 |
tttctattttgcaggatgttgtaagtttgaccagttttttccaaaacacctttggaataactgtaaaggagaagcaactttctgttagcgggcgcaattg |
200 |
Q |
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| T |
35501348 |
tttctattttgcaggatgttgtaagtttgaccagttttttccaaaacacctttggaataactgtaaaggagaagcaactttctgttagtgggcgcaattg |
35501249 |
T |
|
| Q |
201 |
gggagaagttgatttaaatggtcagtgatgtttacatgaattgactaatgtgttgaaatggatatttttcctcttgatgctttgcgtctttctcagttat |
300 |
Q |
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| T |
35501248 |
gggagaagttgatttaaatggtcagtgatgtttacatgaactgactaatgtgttgaaatggatatctttcctcttgatgctttgcgtctttctcagacat |
35501149 |
T |
|
| Q |
301 |
ctctatttgtcatcattacttgttattctatgagaaaattttttatgagacaataaaaatatattgcacctcgttttgtttgaaatcagtaatcatcact |
400 |
Q |
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| T |
35501148 |
ctctctttgtcatcattacttgttatactatgagaaaatttgttttgagagaaaaaaaaaatatttcacactgtgttctgtataacacgtaaacatcaca |
35501049 |
T |
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| Q |
401 |
agaacatggtatgctgatatttttagcaaggggtatatctctactaagatcttcagtt |
458 |
Q |
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| T |
35501048 |
agaacatggtatgctgatattttcagcaaggggtagcactctactaagatattcagtt |
35500991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 7070123 - 7070258
Alignment:
| Q |
105 |
tattttgcaggatgttgtaagtttgaccagttttttccaaaacacctttggaataactgtaaaggagaagcaactttctgttagcgggcgcaattgggga |
204 |
Q |
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||||||| ||||||||||||| ||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
7070123 |
tattttgtaggatgttgtaagcttgacaagtttcttccaaaacaccttcggagtaactgttggggagaagcaactttctgttactgggcgcaattgggga |
7070222 |
T |
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| Q |
205 |
gaagttgatttaaatggtcagtgatgtttacatgaa |
240 |
Q |
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| T |
7070223 |
gaagttgatctaaatggttggtgatctttacatgaa |
7070258 |
T |
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