View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19828_low_16 (Length: 462)

Name: NF19828_low_16
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19828_low_16
NF19828_low_16
[»] chr2 (3 HSPs)
chr2 (14-445)||(33370016-33370449)
chr2 (14-411)||(33363708-33364104)
chr2 (220-373)||(5839238-5839391)
[»] chr1 (7 HSPs)
chr1 (14-436)||(41431738-41432159)
chr1 (14-416)||(41442368-41442766)
chr1 (14-436)||(41426345-41426765)
chr1 (268-382)||(41453658-41453772)
chr1 (208-308)||(41448905-41449006)
chr1 (14-138)||(41449250-41449374)
chr1 (289-344)||(52472991-52473046)
[»] scaffold0648 (1 HSPs)
scaffold0648 (14-436)||(5833-6253)
[»] scaffold0274 (1 HSPs)
scaffold0274 (14-436)||(17205-17625)
[»] chr7 (2 HSPs)
chr7 (198-412)||(7762925-7763139)
chr7 (14-136)||(7762763-7762885)
[»] chr8 (2 HSPs)
chr8 (223-369)||(21223819-21223965)
chr8 (42-123)||(21223634-21223715)
[»] chr4 (1 HSPs)
chr4 (211-343)||(1004661-1004793)


Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Complemental strand, 33370449 - 33370016
Alignment:
Q  14 tggagtccacatctgatttttgtcgcctgaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccacca 113  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33370449 tggagtccacatctgatttttgtcaccagaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccaccg 33370350  T
Q  114 gagtggtagtggacctgctgccatgnnnnnnnntggaccagtttgtcggaattgaatttaaatgagtgaactagaaaataacgtcagtcagataaagtat 213  Q
    |||||||||||||| ||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33370349 gagtggtagtggacttgctgccatgaaaaaaaatggaccagtttgtcggaattgaatttaaatgagtgaactagaaaataacgtcagtcagataaagtat 33370250  T
Q  214 cctcaaccacataccggggg--tccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaat 311  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33370249 cctcaaccacataccgggggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaat 33370150  T
Q  312 aatcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgtgcattaaagataaaagtgaaagaaatggtcaggttga 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33370149 aatcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgtgcattaaagataaaagtgaaagaaatggtcaggttga 33370050  T
Q  412 gcaatttgcagaagcaggtttcacactagtgtct 445  Q
    ||||||||||||||||||||||||||||||||||    
T  33370049 gcaatttgcagaagcaggtttcacactagtgtct 33370016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 411
Target Start/End: Complemental strand, 33364104 - 33363708
Alignment:
Q  14 tggagtccacatctgatttttgtcgcctgaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccacca 113  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||| || || |||||| ||||  ||    
T  33364104 tggagtccacatctgattcttgtcgccagaccaggtgttaagtagactgaggcatactttgccacaatcatacaaatttggattaagccgatgacctaca 33364005  T
Q  114 gagtggtagtggacctgctgccatgnnnnnnnntggaccagtttgtcggaattgaatttaaatgagtgaactagaaaataacgtcagtcagataaagtat 213  Q
    |||||||||||||| | |||||           ||  ||| |||||| |||||||||| ||| ||||| || ||||||||| |||||  | |||||||||    
T  33364004 gagtggtagtggactttctgccccacaaaaaattgtccca-tttgtcagaattgaattaaaaagagtgcacaagaaaataatgtcagctaaataaagtat 33363906  T
Q  214 cctcaaccacataccgggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataa 313  Q
     ||||||||| |||||||||| |||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33363905 tctcaaccacgtaccgggggtacattgggatatttaggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataa 33363806  T
Q  314 tcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgtgcattaaagataaaagtgaaagaaatggtcaggttga 411  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||   |||||||||| |||||| |||||||||||||| ||||    
T  33363805 tcacagctctcatgagatccatccttgattcgaagattctcacaaatattgtatctgacaagcattaaagaaaaaagtcaaagaaatggtcagattga 33363708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 220 - 373
Target Start/End: Original strand, 5839238 - 5839391
Alignment:
Q  220 ccacataccgggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatcacag 319  Q
    ||||||||||| ||| |||||||| | |||   || ||||||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  5839238 ccacataccggcggtacattgggaaagccaccaggtaagtaaagatcgaaaaagaaaagaccgtcatggtaaggagtcccgtctgctccaataattacag 5839337  T
Q  320 ccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatg 373  Q
    |||||||||||||||| |||||||| || ||||  |||||||||| ||||||||    
T  5839338 ccctcatgagatccattcttgattcataaactcgaacaaatattgaatctgatg 5839391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 14 - 436
Target Start/End: Complemental strand, 41432159 - 41431738
Alignment:
Q  14 tggagtccacatctgatttttgtcgcctgaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccacca 113  Q
    |||||||||  ||||||| |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41432159 tggagtccatttctgattcttgctgccagaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccacca 41432060  T
Q  114 gagtggtagtggacctgctgccatgnnnnnnnntggaccagtttgtcggaattgaatttaaatgagtgaactagaaaataacgtcagtcagataaagtat 213  Q
    |||||||||||||| ||||||||||        |||||| ||| |||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||||    
T  41432059 gagtggtagtggacttgctgccatgaaaaaaa-tggacccgtt-gtcggaattgaattaaaaggagtgaacaagaaaataatgtcagtcagataaagtat 41431962  T
Q  214 cctcaaccacataccgggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataa 313  Q
    | |||||||| |||||||||| |||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41431961 catcaaccacgtaccgggggtacattgggatatttaggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataa 41431862  T
Q  314 tcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgtgcattaaagataaaagtgaaagaaatggtcaggttgagc 413  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||| |    
T  41431861 tcacagccctcatgagatccatccttgattcgaagactctcacaaatattgtatctgatgagcattaaagaaaaaagtcaaagatatggtcaggttgatc 41431762  T
Q  414 aatttg-cagaagcaggtttcaca 436  Q
    ||| || ||||| |||||||||||    
T  41431761 aatatgccagaaacaggtttcaca 41431738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 416
Target Start/End: Complemental strand, 41442766 - 41442368
Alignment:
Q  14 tggagtccacatctgatttttgtcgcctgaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccacca 113  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| | |    
T  41442766 tggagcccacatctgatttctgtcgccagaccaggtgttaagtagactgaggcatactttaccacagccatacaaattagggttgagtcgaagacctcta 41442667  T
Q  114 gagtggtagtggacctgctgccatgnnnnnnnntggaccagtttgtcggaattgaatttaaatgagtgaactagaaaataacgtcagtcagataaagtat 213  Q
    ||||||||||||||  ||||||| |          ||||  |||||  |||||||||| ||| |||| ||| |||||| |||||| ||||||||||||||    
T  41442666 gagtggtagtggactagctgccacgaaaataac--gacccttttgttagaattgaattaaaaagagttaacaagaaaacaacgtctgtcagataaagtat 41442569  T
Q  214 cctcaaccacataccgggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataa 313  Q
     || |||||| |||||||||| |||||||||| ||||  |||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41442568 tcttaaccacgtaccgggggtacattgggatagccagttggaaagtgtacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataa 41442469  T
Q  314 tcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgtgcattaaagataaaagtgaaagaaatggtcaggttgagc 413  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||  || ||||||||||||||| |||    
T  41442468 tcacagctctcaagagatccatccttgattcgcagactctcacaaatattgtatttgatgagcattaaagaaaaaa--gacagaaatggtcaggttaagc 41442371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 436
Target Start/End: Complemental strand, 41426765 - 41426345
Alignment:
Q  14 tggagtccacatctgatttttgtcgcctgaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccacca 113  Q
    |||||||||||||| ||  | ||||||   |||||||  ||||||||||||||| || | ||||| |  |||||||||||||||||| | |||||| |||    
T  41426765 tggagtccacatctcatcctcgtcgccctcccaggtgccaagtagactgaggcaaacatagccactgctatacaaattagggttgagtccaagacctcca 41426666  T
Q  114 gagtggtagtggacctgctgccatgnnnnnnnntggaccagtttgtcggaattgaatttaaatgagtgaactagaaaataacgtcagtcagataaagtat 213  Q
    || ||||||||||| |||||||| |        |  | || ||||||||||||||||| ||| |||||||| ||||| |||  || | || |||||||||    
T  41426665 gaatggtagtggacttgctgccacgaaaaaaagtt-atca-tttgtcggaattgaattaaaaagagtgaacaagaaa-taatatcggccaaataaagtat 41426569  T
Q  214 cctcaaccacataccgggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataa 313  Q
     |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  41426568 tctcaaccacataccgggggttcattgggatatccagggggaaagtaaacatcaaaaaagaaaagactgtcatggtaaggagtcccttttgctccaataa 41426469  T
Q  314 tcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgtgcattaaagataaaagtgaaagaaatggtcaggttgagc 413  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| | ||||| || |||||||||||||||||||| |||||||    
T  41426468 tcacagccctcatgagatccatccttgattcacagactctcacaaatattgtatctgatgagaattaatgaaaaaagtgaaagaaatggtcatgttgagc 41426369  T
Q  414 aatttg-cagaagcaggtttcaca 436  Q
    ||| || ||||||| |||||||||    
T  41426368 aatatgccagaagctggtttcaca 41426345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 268 - 382
Target Start/End: Complemental strand, 41453772 - 41453658
Alignment:
Q  268 aaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtat 367  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  41453772 aaaaataaaagaccgtcatggtaaggagtctcttctgctccaataatcacagccctcaagagatccatccttgattcatagactctcacaaatattgtat 41453673  T
Q  368 ctgatgtgcattaaa 382  Q
    |||||| ||||||||    
T  41453672 ctgatgagcattaaa 41453658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 41449006 - 41448905
Alignment:
Q  208 aagtatcctcaaccacataccgggggtccattgggatatccaggggg-aaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgct 306  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  41449006 aagtatcctcaaccacatactgggggtacattgggatatccaggggggaaagtaaacatcaaaaaagaaaagaccgttatggtaaggagtctcttctgct 41448907  T
Q  307 cc 308  Q
    ||    
T  41448906 cc 41448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 41449374 - 41449250
Alignment:
Q  14 tggagtccacatctgatttttgtcgcctgaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccacca 113  Q
    |||||||||  ||||||  |||| |||  ||||||||| ||||||||||||| ||||||| ||| | |||||||||||||||||||||| ||| || |||    
T  41449374 tggagtccatttctgatccttgttgccaaaccaggtgtcaagtagactgagggatactttcccagaagcatacaaattagggttgagcccaaggccgcca 41449275  T
Q  114 gagtggtagtggacctgctgccatg 138  Q
    |||||||| ||||| ||||||||||    
T  41449274 gagtggtaatggacttgctgccatg 41449250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 52473046 - 52472991
Alignment:
Q  289 taaggagtcccttctgctccaataatcacagccctcatgagatccatccttgattc 344  Q
    |||||||| || |||||||||||||| |||||||||| ||||||||||||||||||    
T  52473046 taaggagttccatctgctccaataattacagccctcaagagatccatccttgattc 52472991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 436
Target Start/End: Complemental strand, 6253 - 5833
Alignment:
Q  14 tggagtccacatctgatttttgtcgcctgaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccacca 113  Q
    |||||||||||||| ||  | ||||||   |||||||  ||||||||||||||| || | ||||| |  |||||||||||||||||  | |||||| |||    
T  6253 tggagtccacatctcatcctcgtcgccctcccaggtgccaagtagactgaggcaaacatagccactgctatacaaattagggttgactccaagacctcca 6154  T
Q  114 gagtggtagtggacctgctgccatgnnnnnnnntggaccagtttgtcggaattgaatttaaatgagtgaactagaaaataacgtcagtcagataaagtat 213  Q
    || ||||||||||| |||||||| |        || |||| ||||||||||||||||| ||| |||||||| ||||| |||  || | || |||||||||    
T  6153 gaatggtagtggacttgctgccacgaaaaaaagtg-acca-tttgtcggaattgaattaaaaagagtgaacaagaaa-taatatctgccaaataaagtat 6057  T
Q  214 cctcaaccacataccgggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataa 313  Q
     |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6056 tctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataa 5957  T
Q  314 tcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgtgcattaaagataaaagtgaaagaaatggtcaggttgagc 413  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||| |||||||    
T  5956 tcacagccctcatgagatccattcttgattcacagactctcacaaatattgtatctgatgagcattaatgaaaaaagtgatagaaatggtcatgttgagc 5857  T
Q  414 aatttg-cagaagcaggtttcaca 436  Q
    ||| || ||||||| |||||||||    
T  5856 aatatgccagaagctggtttcaca 5833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 17205 - 17625
Alignment:
Q  14 tggagtccacatctgatttttgtcgcctgaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccacca 113  Q
    |||||||||||||| ||  | ||||||   |||||||  ||||||||||||||| || | ||||| |  |||||||||||||||||  | |||||| |||    
T  17205 tggagtccacatctcatcctcgtcgccctcccaggtgccaagtagactgaggcaaacatagccactgctatacaaattagggttgactccaagacctcca 17304  T
Q  114 gagtggtagtggacctgctgccatgnnnnnnnntggaccagtttgtcggaattgaatttaaatgagtgaactagaaaataacgtcagtcagataaagtat 213  Q
    || ||||||||||| |||||||| |        || |||| ||||||||||||||||| ||| |||||||| ||||| |||  || | || |||||||||    
T  17305 gaatggtagtggacttgctgccacgaaaaaaagtg-acca-tttgtcggaattgaattaaaaagagtgaacaagaaa-taatatctgccaaataaagtat 17401  T
Q  214 cctcaaccacataccgggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataa 313  Q
     |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17402 tctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataa 17501  T
Q  314 tcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgtgcattaaagataaaagtgaaagaaatggtcaggttgagc 413  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||| |||||||    
T  17502 tcacagccctcatgagatccattcttgattcacagactctcacaaatattgtatctgatgagcattaatgaaaaaagtgatagaaatggtcatgttgagc 17601  T
Q  414 aatttg-cagaagcaggtttcaca 436  Q
    ||| || ||||||| |||||||||    
T  17602 aatatgccagaagctggtttcaca 17625  T

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Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 198 - 412
Target Start/End: Original strand, 7762925 - 7763139
Alignment:
Q  198 cagtcagataaagtatcctcaaccacataccgggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtc 297  Q
    |||||||||||||||   |||||||| |||||||||| ||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  7762925 cagtcagataaagtagtttcaaccacgtaccgggggttcatcgggatattcagggggaaagtataaatcaaaaaagaaaagaccatcatggtaaggagtc 7763024  T
Q  298 ccttctgctccaataatcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgtgcattaaagataaaagtgaaaga 397  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |    
T  7763025 ccttgtgctccaataatcacagctctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagcattaaagaaaaaagtcaaata 7763124  T
Q  398 aatggtcaggttgag 412  Q
    |||||||||||||||    
T  7763125 aatggtcaggttgag 7763139  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 7762763 - 7762885
Alignment:
Q  14 tggagtccacatctgatttttgtcgcctgaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccacca 113  Q
    |||||||||||||| ||  | ||||||   ||||||||||||||||||||||||||| | ||||    |||||||||| || ||||||| ||||||||||    
T  7762763 tggagtccacatctcatcgtcgtcgccaacccaggtgttaagtagactgaggcatacatagccattttcatacaaatttggattgagcccaagaccacca 7762862  T
Q  114 gagtggtagtggacctgctgcca 136  Q
    |||||||||| ||  ||||||||    
T  7762863 gagtggtagtcgagttgctgcca 7762885  T

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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 369
Target Start/End: Original strand, 21223819 - 21223965
Alignment:
Q  223 cataccgggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatcacagccc 322  Q
    |||||||| ||| |||||||| | |||  ||||||| ||| |||||||||||| || |||||||| ||||| || || ||||||||||||||||||||||    
T  21223819 cataccggaggtacattgggaaagccactgggaaagaaaaaatcaaaaaagaataggccatcatgataaggggttccctctgctccaataatcacagccc 21223918  T
Q  323 tcatgagatccatccttgattcgtagactctcacaaatattgtatct 369  Q
    |||  ||||| || |||||||| || ||||| |||||||||| ||||    
T  21223919 tcaacagatctattcttgattcataaactctgacaaatattgaatct 21223965  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 21223634 - 21223715
Alignment:
Q  42 gaccaggtgttaagtagactgaggcatactttgccacaggcatacaaattagggttgagccgaagaccaccagagtggtagt 123  Q
    ||||||||||||||||| || || || |||||||||||   ||| ||||| |||||||| ||||| ||||||||||||||||    
T  21223634 gaccaggtgttaagtaggctaagacaaactttgccacaattatataaatttgggttgagtcgaagtccaccagagtggtagt 21223715  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 343
Target Start/End: Complemental strand, 1004793 - 1004661
Alignment:
Q  211 tatcctcaaccacataccgggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaa 310  Q
    |||||||||| ||||||||||||| || |||||||   |   || ||||||| |||||||||||||||||| |  |||||||||||||||| || |||||    
T  1004793 tatcctcaacgacataccgggggtacaatgggatagttactagggaagtaaaaatcaaaaaagaaaagaccgtgctggtaaggagtcccttttggtccaa 1004694  T
Q  311 taatcacagccctcatgagatccatccttgatt 343  Q
    |||| ||||||||||  |||| |||| ||||||    
T  1004693 taattacagccctcaacagattcatctttgatt 1004661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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