View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_17 (Length: 458)
Name: NF19828_low_17
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 4 - 441
Target Start/End: Original strand, 3702127 - 3702564
Alignment:
| Q |
4 |
caaaggatgagttgtgtgagcaacaatatgagaggttcaaacagatggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatga |
103 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
3702127 |
caaaagatgagttgtgcgagcaacaatatgagaggttcaaacagttggtggtagaagccaagacactgcttggaaaggcatgtcaagatttaggagatga |
3702226 |
T |
|
| Q |
104 |
gttgtgtgagtaaacattgtgagaactttgccaccagaaatttgttcaatgatcaaatggggacgggcctgaacctcaacattcaaagggtgattttcag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702227 |
gttgtgtgagtaaacattgtgagaactttgccaccagaaatttgttcaatgatcaaatggggacgggcctgaacctcaacattcaaagggtgattttcag |
3702326 |
T |
|
| Q |
204 |
tagcctttcgaagtacaatggtagcaaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccgctact |
303 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702327 |
tagcctttcgaagtacaatggtggcaaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccgctact |
3702426 |
T |
|
| Q |
304 |
accttgcatttggatgatatggattatttgatcaagtgtttgaaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtag |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3702427 |
accttgcatttggatgatatggattatttgatcaagtgtttgaaacagccctttgaccatgttacgacggttgacatttttcctttttacgagcatgtag |
3702526 |
T |
|
| Q |
404 |
aattgtttgccggcaacttcctaatatgacattcagct |
441 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
3702527 |
aattgtttgccggcaacttcctaatatgacattcagct |
3702564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 228 - 441
Target Start/End: Original strand, 3717062 - 3717274
Alignment:
| Q |
228 |
caaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccg-ctactaccttgcatttggatgatatgga |
326 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||| || | | ||||||||||| |||||||||||||| |
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|
| T |
3717062 |
caaaattcttattgttccagcaaattgcaggaagagctggtag--gagtatgcctttatcctgatgaactggccactaccttgcagttggatgatatgga |
3717159 |
T |
|
| Q |
327 |
ttatttgatcaagtgtttgaaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaattgtttgccggcaacttccta |
426 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||||| |
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| T |
3717160 |
ttatttgatcgagtgtttgaaacagccctttgaccacgttacgagggttggcattttccctttttacgagcaagtagaattgtttcccggcaacttccta |
3717259 |
T |
|
| Q |
427 |
atatgacattcagct |
441 |
Q |
| |
|
||||||||||||||| |
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|
| T |
3717260 |
atatgacattcagct |
3717274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 251 - 436
Target Start/End: Original strand, 3705689 - 3705883
Alignment:
| Q |
251 |
attgcaggaagagctggtagaagaggatgcctttatcccgatggacc-gctactaccttgcatttggat-------gatatggattatttgatcaagtgt |
342 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
3705689 |
attgcaggaagatctgatagaagaggatgcctttatcctgatggacttgctactaccttgcatttggattttggatgatatggattatttgatcgtgtgt |
3705788 |
T |
|
| Q |
343 |
ttgaaacaa-ccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaattgtttgccggcaacttcctaatatgacatt |
436 |
Q |
| |
|
||| ||||| ||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
3705789 |
ttggaacaagccctttgaccacgttacgagggttggcatttttcttttttacgagcaagtagaattctttgccggcaacttcctaatatgacatt |
3705883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 3713557 - 3713693
Alignment:
| Q |
9 |
gatgagttgtgtgagcaacaa---tatgagaggttcaaacagatggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagt |
105 |
Q |
| |
|
||||||||||| |||||| || |||||||| ||||||||| ||||||| ||||| ||||||||||||||||| | |||| ||||| | ||||||||| |
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|
| T |
3713557 |
gatgagttgtgcgagcaaaaactatatgagagattcaaacagttggtggttgaagcaaagaccctgcttggaaatgtatgttaagatacaggagatgagt |
3713656 |
T |
|
| Q |
106 |
tgtgtgagtaaacattgtgagaactttgccaccagaaatt |
145 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||||| |
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| T |
3713657 |
tgtgtgag-caacattatgaga--tttgccaccagaaatt |
3713693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 435
Target Start/End: Original strand, 3708327 - 3708599
Alignment:
| Q |
172 |
ctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattct-----tactgtt----ccagcaaattgcaggaaga |
262 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||||| | | || | ||||| ||||| |
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|
| T |
3708327 |
ctgaatctcaacatttgaagggtgattttcaatagcctttcgaagtacaatggtgacaaaattcttcgtgtactggtgtcacaagttatttgcaagaaga |
3708426 |
T |
|
| Q |
263 |
gctggtagaagaggatgcctttatcccgatggac-cgctactaccttgcatttggatgatatggattatttgatcaagtgtttgaaacaaccctttgacc |
361 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||||| | | || ||||||||||| |||||| || ||| ||||| |||||||||||| | ||||||| | |
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|
| T |
3708427 |
gccggttgaagaggatgcctttatctcgatggactcaccacaaccttgcatttagatgatttgatttacttgatagagtgtttgaaacca-cctttgatc |
3708525 |
T |
|
| Q |
362 |
atgttacgagggttgacatttttcctttttacgagcatgtagaattgtttgcc-ggcaacttcctaatatgacat |
435 |
Q |
| |
|
||| ||| | ||||| | |||||||||||| ||||| || |||||||| || | |||||||||||||| |||| |
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|
| T |
3708526 |
atgctactaaggttggc-cttttcctttttatgagcaggtcaaattgtttcccagacaacttcctaatattacat |
3708599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 3713740 - 3713791
Alignment:
| Q |
228 |
caaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
3713740 |
caaaattcttactgttccagcaaattgcaggaagtgctggtggaagaggatg |
3713791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 3716900 - 3717013
Alignment:
| Q |
30 |
tatgagaggttcaaacagatggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgag----taaacattgtga |
125 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||||||| ||||| |||||||||| | || |||||||||||||| | |||||| ||| |
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|
| T |
3716900 |
tatgagaggttcaaacagttggtggttgaatccaagaccctgc----aaaggtatgtcaagatacaagaaatgagttgtgtgagcaaattaacattatga |
3716995 |
T |
|
| Q |
126 |
gaactttgccaccagaaa |
143 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
3716996 |
gagctttgccaccagaaa |
3717013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 440
Target Start/End: Complemental strand, 3520411 - 3520116
Alignment:
| Q |
161 |
tggggacgggcctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattcttactgttccagc------------ |
248 |
Q |
| |
|
|||||| |||||| ||||| ||||||| |||||||||||| | || |||||| |||||||| ||| |||||||||| |||||||||| |
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|
| T |
3520411 |
tggggatgggccttaaccttaacattcgaagggtgatttttaataacctttcaaagtacaacggtgacaaaattcttcctgttccagcgtcacaggttaa |
3520312 |
T |
|
| Q |
249 |
--aaattgcaggaagagctggtagaagaggatgcctttatcccgatggac-cgctactaccttgcatttggatgatatggattatttgatcaagtgtttg |
345 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||||||||| ||| ||||| |||||||| || ||| ||||||| |||||| |||||||| |
|
|
| T |
3520311 |
gcaaattgccggaagagctggtcgaagaggatgtgtttatcccgatggactcgccactactttgcatttagaggatttggattacttgatcgagtgtttg |
3520212 |
T |
|
| Q |
346 |
aaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaattgtttgccgg-caacttcctaatatgacattcagc |
440 |
Q |
| |
|
|||||||||||||| ||||| || ||||| | ||||||||| ||| ||||| || |||||||| ||||| |||||| |||| |||||||||||| |
|
|
| T |
3520211 |
aaacaaccctttgatcatgtggagaaggttggcctttttccttattatgagcaggttgaattgttcgccggacaactttctaacatgacattcagc |
3520116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 3520685 - 3520615
Alignment:
| Q |
9 |
gatgagttgtgtgagcaacaatatgagaggttcaaacagatggtggtagaagccaagaccctgcttggaaa |
79 |
Q |
| |
|
||||| |||| ||||||||| |||||||||||||||| | |||| || ||||| ||||||||||||||||| |
|
|
| T |
3520685 |
gatgatttgtatgagcaacattatgagaggttcaaaccgttggtagtcgaagcaaagaccctgcttggaaa |
3520615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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