View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19828_low_18 (Length: 457)
Name: NF19828_low_18
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 168 - 450
Target Start/End: Original strand, 48255003 - 48255293
Alignment:
| Q |
168 |
gtcaaataaataaaaacttaatggattattttataattaggaatcaaacttggtatcttatagtttacaacacttgcatatcttcatggttacattttaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48255003 |
gtcaaataaataaaaacttaatggattattttataattaggaatcaaacttggtatcttatagtttacaacacttgcatatcttcatggttacattttaa |
48255102 |
T |
|
| Q |
268 |
ggtaaaatatttaatacatctggtataaagtattttgcaaattaatctaaatttgaaagaagactatcacataactttgtctatgccttccatctcaaag |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
48255103 |
ggtaaaatatttaatacatctggtataaagcattttgcaaattaatctaaattttaaagaaaactatcacataactctgtctatgtcttccatctcaaag |
48255202 |
T |
|
| Q |
368 |
aatttaacagatgc------tatttggcaatgcttaatatacnnnnnnnnaatca--atatattcgatgcatgacaattttttaagaatta |
450 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
48255203 |
aatttaacagatgctattaatatttggcaatgcttaatatacttttttttaatcaatatatatttgatgcatgactattttttaagaatta |
48255293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 48254849 - 48254936
Alignment:
| Q |
15 |
acattcatctct-aagatgaataagtggagtttggagtttgaactctgacctttaaaccttatcaagtgagttatgcttaggaggacg |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||| | |||||||| ||||||||||||||||||||| |
|
|
| T |
48254849 |
acattcatctcttaagatgaataagtggggtttgaagtttgaactccgacctttacatcttatcaactgagttatgcttaggaggacg |
48254936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University