View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_19 (Length: 439)
Name: NF19828_low_19
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 425
Target Start/End: Complemental strand, 39073239 - 39072827
Alignment:
| Q |
15 |
cataggaacttgatgatgatcttgttggagaataatacggttttgttcatttgtttccattttttcaagattccaagtgcttgtgaatgcgctactagta |
114 |
Q |
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| T |
39073239 |
cataggaacttgatgatgatcttgttggagaataatacggttttgttcatttgtttccattttttcaagattccaagtgcttgtgaatgcgctactagta |
39073140 |
T |
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| Q |
115 |
ttattttggttattttccatgaccaaaaacaattatatatatgaaaaatatgaagtgttaggttctaattttgatggatctagctagttagatgatcttg |
214 |
Q |
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| T |
39073139 |
ttattttggttattttccatgaccaaaaacaattatatatatgaaaaatatgaagtgttaggttctaattttgatggatctagctagttagatgatcttg |
39073040 |
T |
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| Q |
215 |
tgtatctttattgatttaatactttaattagctaaaattctaccnnnnnnnnnnctttaattagctaaaagagaagagggaataaacaat-aaaaggggt |
313 |
Q |
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| T |
39073039 |
tgtatctttattgatttaatactttaattagctaaaattctaccaaaaaaaaaactttaattagctaaaagataagagggaataaacaataaaaaggggt |
39072940 |
T |
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| Q |
314 |
taatttgagatatttgatcaac-nnnnnnngaacaacagaagaaatgaatattcaataaaacgagtataaaggatactcaaactcaaaagacgataagag |
412 |
Q |
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| T |
39072939 |
taatttgagatatttgatcaacttttttttgaacaacagaagaaatgaatattcaataaaacgaatataaatgatactcaaactcaaaagacgataagag |
39072840 |
T |
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| Q |
413 |
aatgagagaagaa |
425 |
Q |
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| T |
39072839 |
aatgagagaagaa |
39072827 |
T |
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