View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_2 (Length: 877)
Name: NF19828_low_2
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 279901 - 279520
Alignment:
| Q |
1 |
cattcatgtgactaatgcagagcactctaaccataatgatgatggtaatgttcacaaaaatgaggaacaaactacttcaattcctttggggaatgactca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279901 |
cattcatgtgactaatgcagagcactctaaccataatgatgatggtaatgttcacaaaaatgaggaacaaactacttcaattcctttggggaatgactca |
279802 |
T |
|
| Q |
101 |
agtttcgttgcagacaatcctgaccctcacactaacaataacactgatacaaccacagaaaaggacacatctgcatctgagccacaaaatgatgatacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279801 |
agtttcgttgcagacaatcctgaccctcacactaacaataacactgatacaaccacagaaaaggacacatctgcatctgagccacaaaatgatgatacca |
279702 |
T |
|
| Q |
201 |
caagaatagatgcagaccatacaacactgaatccccctcaaaagttgctcagatggaggaaccaattcctgatagtcaacccaacaatgcaatggttgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279701 |
caagaatagatgcagaccatacaacactgaatccccctcaaaagttgctcagatggaggaaccaattcctgatagtcaacccaacaatgcaatggttgat |
279602 |
T |
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| Q |
301 |
accaacaataaggatgatcaagctactagaagcgaagcagaacactcgacacaggaatctccttcaaaagctgctgaggaaa |
382 |
Q |
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| T |
279601 |
accaacaataaggatgatcaagctactagaagcgaagcagaacactcgacacaggaatctccttcaaaagctgctgaggaaa |
279520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 381 - 807
Target Start/End: Complemental strand, 279475 - 279049
Alignment:
| Q |
381 |
aataatgagtttggtttagtcccctcaactttattttgtannnnnnnnncatttcggtttataatattagataagtgcgctatttcatttacccnnnnnn |
480 |
Q |
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| T |
279475 |
aataatgagtttggtttagtctcctcaactttattttgtatttttttttcatttcggtttataatattagataagtgcgctatttcatttacccaaaaaa |
279376 |
T |
|
| Q |
481 |
nnctattcaaaagatatttcatgaaagaaggagccaagccaattgaattttaattaaccaaaccaacnnnnnnnntcaaattcaggaacagcaagaaaag |
580 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
279375 |
aactagtcaaaagatatttcatgaaagaaggagccaagccaattgaattttaattaaccaaaccaacaaaaaaaatcaaattcaggaacagcaagaaaag |
279276 |
T |
|
| Q |
581 |
tagctatggttttgcttggatgcagtgttgctattgttaatatcataaacaacgagagctaatatagcacattgagccgtcaactggcgtctggcgctat |
680 |
Q |
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| T |
279275 |
tagctatggttttgcttggatgcagtgttgctattgttaatatcataaacaacgagagctaatatagcacattgagccgtcaactggcgtctggcactat |
279176 |
T |
|
| Q |
681 |
caaaagtggttctccggctaatatcataaacaacgagagcaccaacagcccctctgtactaagcacaagtaaccgttgttgaccggctgtatcccaatcc |
780 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279175 |
caaaagtggttctccggctaatatcataaacaacgagagcaccaacagcccctctgtactaagcacaagtaaccgttgttgaccggctgtatcccaatcc |
279076 |
T |
|
| Q |
781 |
tgagccttaacttcattagaatcaatt |
807 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
279075 |
tgagccttaacttcattagaatcaatt |
279049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 801 - 877
Target Start/End: Complemental strand, 267558 - 267482
Alignment:
| Q |
801 |
atcaatttctaatctatgcgtttggaattcaacattggagtgaagattgaacttgtggcgagcgtagcgtgagtgta |
877 |
Q |
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| T |
267558 |
atcaatttctaatctatgcgtttggaattcaacattggagtgaagattgaacttgtggcgagcgtagcgtgagtgta |
267482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 675 - 834
Target Start/End: Complemental strand, 264465 - 264296
Alignment:
| Q |
675 |
cgctatcaaaagtggttctccggctaatatcataaacaacgagagcaccaacagcccctctgtactaagcacaagtaac----------cgttgttgacc |
764 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||| |||||||||||||| || | || |||||| ||||||| |||| |||||| |
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| T |
264465 |
cgctatcaaaagtagttctgcgagaaatatcataaacaataagagcaccaacagcaccacgataataagcagaagtaacagcacgaaaacgttcttgacc |
264366 |
T |
|
| Q |
765 |
ggctgtatcccaatcctgagccttaacttcattagaatcaatttctaatctatgcgtttggaattcaaca |
834 |
Q |
| |
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|| ||||||||| |||||| |||||||| ||||||||||||||||| || || ||||| ||||||||| |
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| T |
264365 |
agcagtatcccaaatctgagctttaacttctttagaatcaatttctaagctctgagtttgaaattcaaca |
264296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 618
Target Start/End: Complemental strand, 265637 - 265576
Alignment:
| Q |
557 |
caaattcaggaacagcaagaaaagtagctatggttttgcttggatgcagtgttgctattgtt |
618 |
Q |
| |
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||||||||||||||||||||||| |||| | | |||||||||||| || ||||| |||||| |
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| T |
265637 |
caaattcaggaacagcaagaaaaatagcctttgctttgcttggatgtagagttgccattgtt |
265576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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