View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19828_low_20 (Length: 434)

Name: NF19828_low_20
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19828_low_20
NF19828_low_20
[»] chr1 (6 HSPs)
chr1 (1-339)||(20433137-20433475)
chr1 (338-416)||(20432711-20432789)
chr1 (8-186)||(20433091-20433268)
chr1 (338-407)||(9998483-9998552)
chr1 (208-334)||(20433290-20433417)
chr1 (93-130)||(9979983-9980020)
[»] chr3 (2 HSPs)
chr3 (1-182)||(17344533-17344713)
chr3 (3-104)||(17344126-17344227)
[»] chr8 (2 HSPs)
chr8 (360-403)||(13145767-13145810)
chr8 (367-403)||(13146650-13146686)
[»] chr4 (1 HSPs)
chr4 (360-403)||(51988836-51988879)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 20433475 - 20433137
Alignment:
Q  1 taaatctatcaattgcatgcatagatggaaattgttaaaaacaattacgacgaataatacaatgaaggaattcatatcttacatgctgacattaatggga 100  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  20433475 taaatctatcaattgcatgcatagatggaaacggttaaaaacaattacgacgaataatacaatgaaggaattcatatcatacatgctgacaataatggga 20433376  T
Q  101 aaaatcaacgatggagaaggttgagggaataagccgcgtcattgagcaagagagaattagtcagaaacatctatagagggcgtcattgagtaaggtatga 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||||    
T  20433375 aaaatcaacgatggagaaggttgagggaataagctgcgtcattgagcaagagagaattagtcggaaacatttctagagggtgtcattgagtaaggtatga 20433276  T
Q  201 aatccctatgactccctctagacttgtttccgactaattctctcctactaaacgacacggcgtattctgtcaaccttctcatcgccaatttttccgatta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20433275 aatccctatgactccctctagacttgtttccgactaattctctcttactaaacgacacggtgtattctgtcaaccttctcatcgccaatttttccgatta 20433176  T
Q  301 ttgtttgaatgtaagatatgaaatcattcattgtgttaa 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20433175 ttgtttgaatgtaagatatgaaatcattcattgtgttaa 20433137  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 338 - 416
Target Start/End: Complemental strand, 20432789 - 20432711
Alignment:
Q  338 aaagtattcactgcatgagaaaagattgcagatctagatttaataaagattaaaaggaataaaaatgatacacacaact 416  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  20432789 aaagtattctctgcatgagaaaagattgcagatctggatttaataaagattaaaatgaataaaaatgatacacacaact 20432711  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 20433091 - 20433268
Alignment:
Q  8 atcaattgcatgcatagatggaaattgttaaaaacaattacgacgaataatacaatgaaggaattcatatcttacatgctgacattaatgggaaaaatca 107  Q
    ||||| |||||||||||||| ||| ||||||||||  ||||||||| ||| |||||||| || |||||||||||||| |  ||| |||| ||||||||      
T  20433091 atcaaatgcatgcatagatgaaaaatgttaaaaacggttacgacgattaacacaatgaatgatttcatatcttacattcaaacaataatcggaaaaattg 20433190  T
Q  108 acgatggagaaggttgagggaataagccgcgtcattgagcaagagagaattagtcagaaacatctatagagggcgtcat 186  Q
     |||| |||||||||||  |||||  ||| ||| || || ||||||||||||||| ||||||  | ||||||| |||||    
T  20433191 gcgat-gagaaggttgacagaatacaccgtgtcgtttagtaagagagaattagtcggaaacaagtctagagggagtcat 20433268  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 407
Target Start/End: Complemental strand, 9998552 - 9998483
Alignment:
Q  338 aaagtattcactgcatgagaaaagattgcagatctagatttaataaagattaaaaggaataaaaatgata 407  Q
    ||||| ||| ||||||||||| |||||||||||| |||| ||||| |||||||||  |||||||| ||||    
T  9998552 aaagtgttctctgcatgagaagagattgcagatcaagatgtaatagagattaaaataaataaaaaagata 9998483  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 334
Target Start/End: Original strand, 20433290 - 20433417
Alignment:
Q  208 atgactccctctagacttgtttccgactaattctctcctactaaacgacacggcgtattctgtcaaccttct-catcgccaatttttccgattattgttt 306  Q
    ||||| |||||||||  |||||||||||||||||||| | || || ||| | || |||||  |||||||||| |||||   |||||||| ||||||||      
T  20433290 atgacaccctctagaaatgtttccgactaattctctcttgctcaatgacgcagcttattccctcaaccttctccatcgttgatttttcccattattgtca 20433389  T
Q  307 gaatgtaagatatgaaatcattcattgt 334  Q
    | ||||| |||||||| || ||||||||    
T  20433390 gcatgtatgatatgaattccttcattgt 20433417  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 9979983 - 9980020
Alignment:
Q  93 taatgggaaaaatcaacgatggagaaggttgagggaat 130  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  9979983 taatgggaaaaatcagcgatggagaaggttgagagaat 9980020  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 17344533 - 17344713
Alignment:
Q  1 taaatctatcaattgcatgcatagatggaaattgttaaaaacaattacgacgaataatacaatgaaggaattcatatcttacatgctgacattaatggga 100  Q
    |||||||||||| |||||  |||||| |||  |||||||||||||| |||| ||||| | |||||||||| |||||||||||||||| | | |||| ||     
T  17344533 taaatctatcaaatgcatcaatagatagaagatgttaaaaacaatttcgacaaataacataatgaaggaactcatatcttacatgctaaaaataat-ggc 17344631  T
Q  101 aaaatcaacgatggagaaggttgagggaataagccgcgtcattgagcaagagagaattagtcagaaacatctatagagggcg 182  Q
    ||||| |    | |||||||||||| ||||| | |||||| ||||  |||||||| ||| ||||||||| ||||||| ||||    
T  17344632 aaaattagtatttgagaaggttgagagaatacgtcgcgtcgttgactaagagagagttactcagaaacaactatagaaggcg 17344713  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 17344227 - 17344126
Alignment:
Q  3 aatctatcaattgcatgcatagatggaaattgttaaaaacaattacgacgaataatacaatgaaggaattcatatcttacatgctgacattaatgggaaa 102  Q
    ||||||| || |||||||||| |||||||  || ||||||||||||||  ||||| | ||||||| |||| | ||||| |||||| ||| ||||||||||    
T  17344227 aatctattaaatgcatgcataaatggaaaaagtcaaaaacaattacgaaaaataacaaaatgaagaaatttacatcttgcatgctaacactaatgggaaa 17344128  T
Q  103 aa 104  Q
    ||    
T  17344127 aa 17344126  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 13145767 - 13145810
Alignment:
Q  360 agattgcagatctagatttaataaagattaaaaggaataaaaat 403  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||    
T  13145767 agattgcaggtctatatttaataaagattaaaagaaataaaaat 13145810  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 13146686 - 13146650
Alignment:
Q  367 agatctagatttaataaagattaaaaggaataaaaat 403  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  13146686 agatctatatttaataaagattaaaagaaataaaaat 13146650  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 51988879 - 51988836
Alignment:
Q  360 agattgcagatctagatttaataaagattaaaaggaataaaaat 403  Q
    |||||||||||||| |||||||| |||||||||| |||||||||    
T  51988879 agattgcagatctatatttaatagagattaaaagaaataaaaat 51988836  T

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