View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_21 (Length: 427)
Name: NF19828_low_21
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 3947778 - 3947646
Alignment:
| Q |
17 |
actttgaatattttcaactctaacaaaacagtgtaatataacatttttaatgattatacactgtaatatcataaataaataaaagattatagaaacattt |
116 |
Q |
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| T |
3947778 |
actttgaatattttcaactctaacaaaacagtgtaatataacatttttaatgattatacactgtaatatcgtaaataaataaaagattatagaaacattt |
3947679 |
T |
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| Q |
117 |
caatcatattgtgtttgctgacactagtttaac |
149 |
Q |
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| T |
3947678 |
caatcatattgtgtttgctgacactagtttaac |
3947646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 3947584 - 3947472
Alignment:
| Q |
211 |
ctacttttctatactctatcaattagctgcacaatacatcataagatatagacttaaatatttaagctatttcaaatgcatctctaataaatttggggtg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3947584 |
ctacttttctatactctatcaattagctgcacaatacatcataagatatagacttaaatatttaagctatttcaaatgcatctctaataaatttggggtg |
3947485 |
T |
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| Q |
311 |
tgattgattacac |
323 |
Q |
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| T |
3947484 |
tgattgattacac |
3947472 |
T |
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