View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_22 (Length: 413)
Name: NF19828_low_22
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 24985837 - 24985538
Alignment:
| Q |
10 |
ataatactggttggatatattgttttgaaaatgttatatatcaatacaatgttcttaattcgtagnnnnnnnaacgttgatgtacttttcactactataa |
109 |
Q |
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| T |
24985837 |
ataatattggttggatatattgttttgaaaatgttatatatcaatacaatgttattaattcgtagtttttttaacgttgatgtacttttcactactataa |
24985738 |
T |
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| Q |
110 |
ataggagtagcctcaaggtatat--gataacttcacatcttatattaaagtcttgtttaaaacgttatttacttataatatcaatgtcttaaatgtatgc |
207 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24985737 |
ataggagtagcctcaaggtatatatgataacttcgcatcttatattaaagtcttgtttaaaacgttatttacttataatatcagtgtcttaaatgtatgc |
24985638 |
T |
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| Q |
208 |
tccccttgttgagtagttaatattagaaacgtatttacccctttcgtcaattactatatggtacctcccattcaattaatttctcgcaatggctaaggtt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24985637 |
tccccttgttgagtagttaatattagaaacgtatttacccctttcgtcaattactatatggtacctcccattcaattaatttctcgcaatggctaaggtt |
24985538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 24991441 - 24991368
Alignment:
| Q |
233 |
gaaacgtatttacccctttcgtcaattactatatggtacctcccattcaattaatttctcgcaatggctaaggtt |
307 |
Q |
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| T |
24991441 |
gaaatgtatttaaccctttcttcgattactttatggtacctcccattcaattaa-ttctcgcaatggctaaggtt |
24991368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 397
Target Start/End: Complemental strand, 24985476 - 24985448
Alignment:
| Q |
369 |
ttattttggccaaaataatcatcacatgt |
397 |
Q |
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| T |
24985476 |
ttattttggccaaaataatcatcacatgt |
24985448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 397
Target Start/End: Complemental strand, 24991306 - 24991278
Alignment:
| Q |
369 |
ttattttggccaaaataatcatcacatgt |
397 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
24991306 |
ttattttggccaaaataatcatcacatgt |
24991278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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