View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19828_low_23 (Length: 403)
Name: NF19828_low_23
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_23 |
 | |
|
| [»] scaffold0329 (1 HSPs) |
| | |
|
| [»] scaffold0669 (1 HSPs) |
| | |
|
| [»] scaffold1416 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0088 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 52777936 - 52778324
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52777936 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
52778035 |
T |
|
| Q |
101 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttgcatcaccag-----tgctctcaatttgtttaaagtgtt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
52778036 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttacatcaccagttacctgctctcaatttgtttaaagtgtt |
52778135 |
T |
|
| Q |
196 |
tggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggttacaaatcaggttttaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52778136 |
tggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatcta-tttttttaggttacaaatcaggttttaa |
52778234 |
T |
|
| Q |
296 |
aggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaacttttcttccttaccctcatac |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52778235 |
aggttttactctatatgatattcaatctagagagatatttgtctctagacatgtcacttttcatgaaacttttcttccttaccctcatac |
52778324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 363
Target Start/End: Original strand, 2360011 - 2360185
Alignment:
| Q |
188 |
aaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggttacaaatca |
287 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||| | || ||||| ||||| ||| |||||||||||||| | || ||| ||||||||| || |
|
|
| T |
2360011 |
aaagtttttggttgtttatgttatgcttccactttacattctcatagaaccaaactgcaacctagagctagaaagtct-ttattcttaggttacaagtct |
2360109 |
T |
|
| Q |
288 |
ggttttaaaggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaa |
363 |
Q |
| |
|
|||| ||| ||||||||||| |||||| |||||||||||||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
2360110 |
ggttataagggttttactctctatgatcttcaatctagagagatttttgtgtcaagacatgttacttttcatgaaa |
2360185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 14455799 - 14455890
Alignment:
| Q |
7 |
aggaaacaccaacatattctcaatgtaggtagagc-tttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatg |
97 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||| ||||| ||||| |||||||| ||||| ||| |||||||||| ||||||||| |
|
|
| T |
14455799 |
aggaaacaccaacatatcctcaatgtagggagagctttttttattccaatctaaactccctccttcatttcggtcatatgcacttcttcatg |
14455890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 2359822 - 2359970
Alignment:
| Q |
4 |
gaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgt |
103 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||| ||||||||||| | | ||| || ||||| || |||||||||||||| |||||||| | ||||||||| | |
|
|
| T |
2359822 |
gaaagaaaacatcaacacattttaaatgttggtagagctttgctttatcagtctaaacttcctccttctttttggtcttatgctatacatcatgctgttt |
2359921 |
T |
|
| Q |
104 |
tcctaatcaacagagttcctactcctattcttcataatcagtcacctta |
152 |
Q |
| |
|
|||| || || ||||||||||| || | |||||||| || |||||||| |
|
|
| T |
2359922 |
tcctcataaatagagttcctacacccttacttcataaccaatcacctta |
2359970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 32612484 - 32612392
Alignment:
| Q |
7 |
aggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgct |
99 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| |||||||| || ||||| |||| || ||||| |||||||| |||| | ||||||||||| |
|
|
| T |
32612484 |
aggaaacatcagcatattcttaatgttggtagggctttattgttccaatctaaacgtcctccttccttttggtcttatgttgttcttcatgct |
32612392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 12285556 - 12285944
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12285556 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
12285655 |
T |
|
| Q |
101 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttgcatcaccag-----tgctctcaatttgtttaaagtgtt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
12285656 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttgcatcaccagttacctgctctcaatttgtttacagtgtt |
12285755 |
T |
|
| Q |
196 |
tggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggttacaaatcaggttttaa |
295 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
12285756 |
tggttgtttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatcta-tttttttaggttacaaatcaggtttgaa |
12285854 |
T |
|
| Q |
296 |
aggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaacttttcttccttaccctcatac |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12285855 |
aggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaacttttcttccttaccctcatac |
12285944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 19586735 - 19586347
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19586735 |
gtagaaaggaaacaccaacacattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgttg |
19586636 |
T |
|
| Q |
101 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttgcatcaccag-----tgctctcaatttgtttaaagtgtt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19586635 |
tgttcctaatcaacagagttcctactcctattcttcataaccagtcaccttattttgtcttgcatcaccagttacctgctctcaatttgtttaaagtgtt |
19586536 |
T |
|
| Q |
196 |
tggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggttacaaatcaggttttaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19586535 |
tggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacttagagctcgtaaatcta-ttttcttaggttacaaatcaggttttaa |
19586437 |
T |
|
| Q |
296 |
aggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaacttttcttccttaccctcatac |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19586436 |
aggttttactctatatgatattcaatctagagagatatttgtctcccgacatgtcacttttcatgaaacttttcttccataccctcatac |
19586347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 7420108 - 7420442
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
100 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7420108 |
gtagaaaggaaacaccaacacatcctcaatgtaaatagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgcta |
7420207 |
T |
|
| Q |
101 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttgcatcaccag-----tgctctcaatttgtttaaagtgtt |
195 |
Q |
| |
|
|||| |||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||| || || ||||||||||||||| |||||||| |
|
|
| T |
7420208 |
tgtttctaatcaa-agagtttctactcctgttcttcataaccagtcaccttattttgtcttgcataacaagttacctgctctcaatttgttcaaagtgtt |
7420306 |
T |
|
| Q |
196 |
tggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggttacaaatcaggttttaa |
295 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||| ||||||||||||| |
|
|
| T |
7420307 |
tggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatcca-ttttcttaggctac-aatcaggttttaa |
7420404 |
T |
|
| Q |
296 |
aggttttactctatatgatattcaatctagagagatat |
333 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7420405 |
gggttttactctctatgatattcaatctagagagatat |
7420442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 8836281 - 8836402
Alignment:
| Q |
16 |
caacatattctcaatgtaggtagagctttattatttcaatccaaact-cccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaac |
114 |
Q |
| |
|
||||||||||| ||||| | |||||||||| | || ||||| ||||| |||| || ||||||||||||||||||| |||||||||| || |||| || |
|
|
| T |
8836281 |
caacatattcttaatgttgctagagctttacttttccaatctaaacttcccaaatt-tttttggtcatatgctattattcatgctgtttttttaataaat |
8836379 |
T |
|
| Q |
115 |
agagttcctactcctattcttca |
137 |
Q |
| |
|
||||| ||||| ||| ||||||| |
|
|
| T |
8836380 |
agagtgcctacccctcttcttca |
8836402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 11265 - 11653
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11265 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttccttttggtcatatgctattcttcatgctg |
11364 |
T |
|
| Q |
101 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttgcatcaccag-----tgctctcaatttgtttaaagtgtt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11365 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttgcatcaccagttacctgctctcaatttgtttaaagtgtt |
11464 |
T |
|
| Q |
196 |
tggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggttacaaatcaggttttaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
11465 |
tggttgcttgtgttatgcttctactctccaatctcacagaacaaaattgcaacctagagctcgtaaatcta-tttttttaggttacaaatcagattttaa |
11563 |
T |
|
| Q |
296 |
aggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaacttttcttccttaccctcatac |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11564 |
aggttttactctatatgatattcaatctagagagatatttgtctctagacatgtcacttttcatgaaacttttcttccttaccctcatac |
11653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 22176966 - 22176627
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22176966 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttccttttggtcatatgctattcttcatgctg |
22176867 |
T |
|
| Q |
101 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttgcatcaccag-----tgctctcaatttgtttaaagtgtt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22176866 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttgcatcaccagttacctgctctcaatttgtttaaagtgtt |
22176767 |
T |
|
| Q |
196 |
tggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggttacaaatcaggttttaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
22176766 |
tggttgcttgtgttatgcttctactctccaatctcacagaacaaaattgcaacctagagctcgtaaatcta-tttttttaggttacaaatcagattttaa |
22176668 |
T |
|
| Q |
296 |
aggttttactctatatgatattcaatctagagagatatttg |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22176667 |
aggttttactctatatgatattcaatctagagagatatttg |
22176627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 35087460 - 35087594
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
100 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| || |||||||||||||||||||||||| | || |||||||||||||||||||| ||| | |||| || |
|
|
| T |
35087460 |
gtagagagaaaacatcaacatattctcaatgttggcagagctttattatttcaatccaaattgccgccttctttttggtcatatgccattttacatgttg |
35087559 |
T |
|
| Q |
101 |
tgttcctaatcaacagagttcctactcctattctt |
135 |
Q |
| |
|
|||| || ||||| ||||| || ||||| |||||| |
|
|
| T |
35087560 |
tgtttctcatcaatagagtccccactcccattctt |
35087594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 363
Target Start/End: Original strand, 5239794 - 5239968
Alignment:
| Q |
188 |
aaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggttacaaatca |
287 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||| | || ||||| ||||| ||| |||||||||||||| | || ||| ||||||||| || |
|
|
| T |
5239794 |
aaagtttttggttgtttatgttatgcttccactttacattctcatagaaccaaactgcaacctagagctagaaagtct-ctattcttaggttacaagtct |
5239892 |
T |
|
| Q |
288 |
ggttttaaaggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaa |
363 |
Q |
| |
|
|||| ||| ||||||||||| |||||| |||||||||||||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
5239893 |
ggttataagggttttactctctatgatcttcaatctagagagatttttgtgtcaagacatgttacttttcatgaaa |
5239968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 363
Target Start/End: Original strand, 10653277 - 10653365
Alignment:
| Q |
275 |
aggttacaaatcaggttttaaaggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaa |
363 |
Q |
| |
|
||||||||| || |||| ||| ||||||||||| |||||| |||||||||||||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
10653277 |
aggttacaagtctggttataagggttttactctctatgatcttcaatctagagagatttttgtgtcaagacatgttacttttcatgaaa |
10653365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 363
Target Start/End: Original strand, 10867422 - 10867510
Alignment:
| Q |
275 |
aggttacaaatcaggttttaaaggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaa |
363 |
Q |
| |
|
||||||||| || |||| ||| ||||||||||| |||||| |||||||||||||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
10867422 |
aggttacaagtctggttataagggttttactctctatgatcttcaatctagagagatttttgtgtcaagacatgttacttttcatgaaa |
10867510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 5239605 - 5239753
Alignment:
| Q |
4 |
gaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgt |
103 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||| ||||||||||| | | ||| || ||||| || ||||| |||||||| |||||||| | ||||||||| | |
|
|
| T |
5239605 |
gaaagaaaacatcaacacattttaaatgttggtagagctttgctttatcagtctaaacttcctccttccttttggtcttatgctatacatcatgctgttt |
5239704 |
T |
|
| Q |
104 |
tcctaatcaacagagttcctactcctattcttcataatcagtcacctta |
152 |
Q |
| |
|
|||| || || ||||||||||| || | |||||||| || |||||||| |
|
|
| T |
5239705 |
tcctcataaatagagttcctacaccattacttcataaccaatcacctta |
5239753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 10653002 - 10653150
Alignment:
| Q |
4 |
gaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgt |
103 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||| ||||||||||| | | ||| || ||||| || ||||| |||||||| |||||||| | ||||||||| | |
|
|
| T |
10653002 |
gaaagaaaacatcaacacattttaaatgttggtagagctttgctttatcagtctaaacttcctccttcattttggtcttatgctatccatcatgctgttt |
10653101 |
T |
|
| Q |
104 |
tcctaatcaacagagttcctactcctattcttcataatcagtcacctta |
152 |
Q |
| |
|
|||| || || ||||||||||| || | |||||||| || |||||||| |
|
|
| T |
10653102 |
tcctcataaatagagttcctacaccattacttcataaccaatcacctta |
10653150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 10867147 - 10867295
Alignment:
| Q |
4 |
gaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgt |
103 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||| ||||||||||| | | ||| || ||||| || ||||| |||||||| |||||||| | ||||||||| | |
|
|
| T |
10867147 |
gaaagaaaacatcaacacattttaaatgttggtagagctttgctttatcagtctaaacttcctccttcattttggtcttatgctatccatcatgctgttt |
10867246 |
T |
|
| Q |
104 |
tcctaatcaacagagttcctactcctattcttcataatcagtcacctta |
152 |
Q |
| |
|
|||| || || ||||||||||| || | |||||||| || |||||||| |
|
|
| T |
10867247 |
tcctcataaatagagttcctacaccattacttcataaccaatcacctta |
10867295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 17130021 - 17130073
Alignment:
| Q |
194 |
tttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgca |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||| |||||||||||||| |
|
|
| T |
17130021 |
tttggttgcttgtgttatgcatctactctacaagctcatagaacaaaattgca |
17130073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 386
Target Start/End: Complemental strand, 23167287 - 23167083
Alignment:
| Q |
181 |
tttgtttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggtta |
280 |
Q |
| |
|
|||||| ||||| |||||||| || || ||||| |||||| | |||||||| | |||||||||| ||| |||||| | ||||| | |||||| |
|
|
| T |
23167287 |
tttgttcaaagtttttggttgtttatgctatgcctctactttacaatctcatacaacaaaattgaaacatagagccagaaaatccatttttat-aggtta |
23167189 |
T |
|
| Q |
281 |
caaatcaggttttaaaggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaacttttcttccttaccct |
380 |
Q |
| |
|
| | ||||||| ||||| || ||||| ||||| |||| |||||||| || ||| |||| ||||||||||| |||||||||| ||||||||| || || |
|
|
| T |
23167188 |
ccagtcaggttacaaaggattcactctttatgaccttcattctagagaaatttttatctctagacatgtcacatttcatgaaaattttcttccctatcca |
23167089 |
T |
|
| Q |
381 |
catact |
386 |
Q |
| |
|
|||||| |
|
|
| T |
23167088 |
catact |
23167083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 22643798 - 22643869
Alignment:
| Q |
185 |
tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagct |
256 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| ||||||||| ||||||||| ||||| ||| |||||||| |
|
|
| T |
22643798 |
tttaaggtttttggttgcttatgttatgcttccactcttcaaaatcacagaaccaaattacaatctagagct |
22643869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 8123041 - 8122971
Alignment:
| Q |
185 |
tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagc |
255 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || |||||| |||| ||||| || || ||||||||||| |
|
|
| T |
8123041 |
tttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagttacaacctagagc |
8122971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 22643624 - 22643760
Alignment:
| Q |
16 |
caacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaaca |
115 |
Q |
| |
|
||||||||| | ||||| | |||||| || ||||||||||| ||| | || ||| | |||||||| |||||| | || ||||||||||| || || |||| |
|
|
| T |
22643624 |
caacatattttgaatgttgttagagccttgttatttcaatcaaaattacctcctacattttggtcttatgctgtcctccatgctgtgtttcttattaaca |
22643723 |
T |
|
| Q |
116 |
gagttcctactcctattcttcataatcagtcacctta |
152 |
Q |
| |
|
| || |||||||| | ||||| |||||||| ||||| |
|
|
| T |
22643724 |
gggtctctactcctttacttcacaatcagtcccctta |
22643760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 22643933 - 22643988
Alignment:
| Q |
321 |
tctagagagatatttgtctccagacatgtcacttttcatgaaacttttcttcctta |
376 |
Q |
| |
|
||||||||||| || | |||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
22643933 |
tctagagagattttcatttccagacatgtctcttttcatgaaactattcttcctta |
22643988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 19034776 - 19034862
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgct |
87 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||||||| | ||| | |||| ||||| |||||| || |||||| ||||||||||||| |
|
|
| T |
19034776 |
gtagaaagaaaacaccaacacattcgcaatgtaggaaaagcccttttatatcaattcaaacttcccgcttcttattggtcatatgct |
19034862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 19804163 - 19804114
Alignment:
| Q |
194 |
tttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaatt |
243 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| ||||| ||||| |
|
|
| T |
19804163 |
tttggttgcttgtgttatgcttccacacttcaagctcatagaaccaaatt |
19804114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 5119568 - 5119647
Alignment:
| Q |
185 |
tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatct |
265 |
Q |
| |
|
|||||||| ||||| || |||| |||||||||||||||||| |||| | |||| |||||||| |||||||| | |||||| |
|
|
| T |
5119568 |
tttaaagtttttggatgtttgtcttatgcttctactcttcaggctcata-aacataattgcaatctagagctagaaaatct |
5119647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 20324072 - 20323926
Alignment:
| Q |
7 |
aggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcc |
106 |
Q |
| |
|
|||||||| ||||||||| | ||||| ||||||||| | || | |||||| ||||| || |||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
20324072 |
aggaaacatcaacatattttgaatgttggtagagctctgttgtatcaatctaaacttcctccttctttctggtcttatgccattcttcatgctgtgtttt |
20323973 |
T |
|
| Q |
107 |
taatcaacagagttcctactcctattcttcataatcagtcaccttat |
153 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||||||||| |||||| |
|
|
| T |
20323972 |
taatcaatagagttcctactcatgttcttcataatcagtctccttat |
20323926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 16990686 - 16990619
Alignment:
| Q |
188 |
aaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagc |
255 |
Q |
| |
|
||||| ||||||||| | |||||||||||||| |||||| |||| ||||||||||| ||| ||||||| |
|
|
| T |
16990686 |
aaagtttttggttgcctttgttatgcttctacacttcaagctcatagaacaaaattacaatctagagc |
16990619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 11924552 - 11924633
Alignment:
| Q |
32 |
taggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaa |
113 |
Q |
| |
|
|||||||||||||||| ||| |||| ||| | || |||||||||||||| ||| |||| ||||||| |||||| || ||||| |
|
|
| T |
11924552 |
taggtagagctttattcttttaatcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttatcaa |
11924633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 11924713 - 11924752
Alignment:
| Q |
188 |
aaagtgtttggttgcttgtgttatgcttctactcttcaat |
227 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
11924713 |
aaagtttttggttgcttgtgttatgcttctacacttcaat |
11924752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 15449234 - 15449321
Alignment:
| Q |
275 |
aggttacaaatcaggttttaaaggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaa |
362 |
Q |
| |
|
||||||||||||||| | ||||| |||||||| | ||||| || |||||||| || ||||| || |||||||||| |||||||||| |
|
|
| T |
15449234 |
aggttacaaatcaggatacaaaggatttactcttttagatatgcattctagagatatctttgtatctagacatgtcatttttcatgaa |
15449321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 26466643 - 26466585
Alignment:
| Q |
185 |
tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaatt |
243 |
Q |
| |
|
|||||||||||||||| ||||||||| || ||||||| ||||| || ||||||||||| |
|
|
| T |
26466643 |
tttaaagtgtttggttctttgtgttattctactactctccaatcgcatagaacaaaatt |
26466585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16990878 - 16990817
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaact |
62 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||| | ||||||||| || |||||||||||||| |
|
|
| T |
16990878 |
gtagagagaaaacatcaacacattctcaatgttgctagagctttgttgtttcaatccaaact |
16990817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 15449148 - 15449176
Alignment:
| Q |
188 |
aaagtgtttggttgcttgtgttatgcttc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15449148 |
aaagtgtttggttgcttgtgttatgcttc |
15449176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 373
Target Start/End: Original strand, 29499653 - 29499995
Alignment:
| Q |
35 |
gtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaacagagttcctactcctattct |
134 |
Q |
| |
|
||||||| ||| | || ||| |||||||||| ||||| || ||||| |||| ||| ||||||| ||||||||| | ||| ||||| ||||| ||| | || |
|
|
| T |
29499653 |
gtagagccttacttttccaaaccaaactccctccttccttctggtcttatgatatccttcatgttgtgttcctcaccaatagagtccctacacctgtact |
29499752 |
T |
|
| Q |
135 |
tcataatcagtcaccttattttgtcttgcatcaccagtg--ct---ctcaatttgtttaaagtgtttggttgcttgtgttatgcttctactcttcaatct |
229 |
Q |
| |
|
| ||||||| |||||||||||||| |||||| || ||| || ||||||||||| ||||| ||| || || || |||||||| || ||||| ||| |
|
|
| T |
29499753 |
taataatcaatcaccttattttgtattgcataacaagttacctaacctcaatttgttcaaagtatttatatgtttatgctatgcttcaacccttcattct |
29499852 |
T |
|
| Q |
230 |
cacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggttacaaatcaggttttaaaggttttactctatatgatattcaatctagagag |
329 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||| ||| ||||||||||||| || || || || || |||||| | | ||||||||| |
|
|
| T |
29499853 |
cacagaacaaaattacaacccagagctataaaatct-cttttcttaggatacaaatcaggttacaagggattcaccctttatgatttatattctagagag |
29499951 |
T |
|
| Q |
330 |
atatttgtctccagacatgtcacttttcatgaaacttttcttcc |
373 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29499952 |
atatttgtatccagacatgtcacttttcatgaaaattttcttcc |
29499995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27036191 - 27036052
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
100 |
Q |
| |
|
||||| || ||||| || |||||||||||||| || |||||||||||||||||||| ||| | |||||| |||||||||||||||| ||| | ||||||| |
|
|
| T |
27036191 |
gtagagagaaaacatcagcatattctcaatgttggcagagctttattatttcaatcaaaattaccacct-ctttttggtcatatgccattttacatgctg |
27036093 |
T |
|
| Q |
101 |
tgttcctaatcaacagagttcctactcctattcttcataat |
141 |
Q |
| |
|
|||| || || || |||||||| |||||||||||||||||| |
|
|
| T |
27036092 |
tgtttctcattaatagagttcccactcctattcttcataat |
27036052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 20483524 - 20483454
Alignment:
| Q |
185 |
tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagc |
255 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||| |||||| |||| ||||||||||| ||| ||||||| |
|
|
| T |
20483524 |
tttaaagtttttggttgcctttgttatgcttctacacttcaagctcatagaacaaaattacaatctagagc |
20483454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 28017660 - 28017730
Alignment:
| Q |
185 |
tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagc |
255 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||| |||||| |||| | ||||||||| ||| ||||||| |
|
|
| T |
28017660 |
tttaaagtttttggttgcctttgttatgcttctacacttcaagctcatataacaaaattacaatctagagc |
28017730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 13130851 - 13130945
Alignment:
| Q |
16 |
caacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaat |
110 |
Q |
| |
|
|||||||| || ||||| | |||||||||| | || ||||| ||||| ||| || |||||||||||||||| || |||||||||| ||| |||| |
|
|
| T |
13130851 |
caacatatccttaatgttgctagagctttacttttccaatctaaacttccaaattttttttggtcatatgctgttattcatgctgttttcttaat |
13130945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 20483713 - 20483652
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaact |
62 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||| | ||||||||| || |||||||||||||| |
|
|
| T |
20483713 |
gtagagagaaaacatcaacacattctcaatgttgctagagctttgttgtttcaatccaaact |
20483652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28017471 - 28017532
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaact |
62 |
Q |
| |
|
||||| || ||||||| ||| ||||||||||| | ||||||||| || |||||||||||||| |
|
|
| T |
28017471 |
gtagagagaaaacaccgacacattctcaatgttgctagagctttgttgtttcaatccaaact |
28017532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 363
Target Start/End: Original strand, 14815252 - 14815426
Alignment:
| Q |
188 |
aaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctannnnnnnnaggttacaaatca |
287 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||| | || ||||| ||||| ||| |||||||||||||| | || ||| ||||||||| || |
|
|
| T |
14815252 |
aaagtttttggttgtttatgttatgcttccactttacattctcatagaaccaaactgcaacctagagctagaaagtct-ctattcttaggttacaagtct |
14815350 |
T |
|
| Q |
288 |
ggttttaaaggttttactctatatgatattcaatctagagagatatttgtctccagacatgtcacttttcatgaaa |
363 |
Q |
| |
|
|||| ||| ||||||||||| |||||| |||||||||||||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
14815351 |
ggttataagggttttactctctatgatcttcaatctagagagatttttgtgtcaagacatgttacttttcatgaaa |
14815426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 5919760 - 5919614
Alignment:
| Q |
7 |
aggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcc |
106 |
Q |
| |
|
|||||||| |||||||| | ||||| || || ||||| || | |||||| ||||| || | ||||||| |||| |||||||||||||||| |||||| |
|
|
| T |
5919760 |
aggaaacattaacatattttaaatgttggcagggctttgttgtatcaatctaaacttcctcattcttttcggtcttatgctattcttcatgttgtgtttt |
5919661 |
T |
|
| Q |
107 |
taatcaacagagttcctactcctattcttcataatcagtcaccttat |
153 |
Q |
| |
|
||||||| ||||| ||||| || |||| ||||||||||| |||||| |
|
|
| T |
5919660 |
taatcaatagagtccctacctctgttctccataatcagtctccttat |
5919614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 12301046 - 12301131
Alignment:
| Q |
2 |
tagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgct |
87 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| |||||||| | | | |||||||||||| || |||||| ||||||||||||| |
|
|
| T |
12301046 |
tagaaagaaaacatcaacatattctcaatgtaagtagagctctcctgtatcaatccaaacttcctgcttcttattggtcatatgct |
12301131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 14815063 - 14815211
Alignment:
| Q |
4 |
gaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgt |
103 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||| ||||||||||| | | ||| || ||||| || ||||| |||||||| |||||||| | ||||||||| | |
|
|
| T |
14815063 |
gaaagaaaacatcaacacattttaaatgttggtagagctttgctttatcagtctaaacttcctccttccttttggtcttatgctatacatcatgctgttt |
14815162 |
T |
|
| Q |
104 |
tcctaatcaacagagttcctactcctattcttcataatcagtcacctta |
152 |
Q |
| |
|
|||| || || ||||||||||| || | |||||||| || |||||||| |
|
|
| T |
14815163 |
tcctcataaatagagttcctacaccattacttcataaccaatcacctta |
14815211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 28939060 - 28938909
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
100 |
Q |
| |
|
|||||||| ||| ||| ||||||| | ||||| || ||||| ||||||||||||||||| || | ||||||||||||||||||||| | || | || |
|
|
| T |
28939060 |
gtagaaagaaaataccgacatattttgaatgttggaagagcccatttatttcaatccaaacttccttcatctttttggtcatatgctattttacacg-tg |
28938962 |
T |
|
| Q |
101 |
tgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttat |
153 |
Q |
| |
|
| ||||| |||||| || |||| || ||| | |||||| |||||||||||||| |
|
|
| T |
28938961 |
ttttccttatcaacggaattcccacacctttacttcatcatcagtcaccttat |
28938909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 6342631 - 6342701
Alignment:
| Q |
185 |
tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagc |
255 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||| |||||| |||| | ||||||||| ||| ||||||| |
|
|
| T |
6342631 |
tttaaagtttttggttgcctttgttatgcttctacacttcaagctcatataacaaaattacaatctagagc |
6342701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 20699281 - 20699168
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctg |
100 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||| || ||||| | ||||||||||||||||| || | || |||||||||||||| ||| | |||| || |
|
|
| T |
20699281 |
gtagaaagaaaacaccaacatattttgaatgttggaagagcccttttatttcaatccaaacttccttcatc-ttttggtcatatgccattttacatgttg |
20699183 |
T |
|
| Q |
101 |
tgttcctaatcaaca |
115 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
20699182 |
ttttccttatcaaca |
20699168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6342442 - 6342503
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaact |
62 |
Q |
| |
|
||||| || ||||||| ||| ||||||||||| | ||||||||| || |||||||||||||| |
|
|
| T |
6342442 |
gtagagagaaaacaccgacacattctcaatgttgctagagctttgttgtttcaatccaaact |
6342503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6569637 - 6569576
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaact |
62 |
Q |
| |
|
||||| || ||||| ||| |||||||||||||||| ||||||||| | | |||||||||||| |
|
|
| T |
6569637 |
gtagagagaaaacatcaatatattctcaatgtaggaagagctttactttgtcaatccaaact |
6569576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28560164 - 28560225
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaact |
62 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||||||||||| | ||| |||||||||||| |
|
|
| T |
28560164 |
gtagaaagaaaacacaaacgcattctcaatgtaggtagagctctcgtatatcaatccaaact |
28560225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 26970148 - 26970200
Alignment:
| Q |
321 |
tctagagagatatttgtctccagacatgtcacttttcatgaaacttttcttcc |
373 |
Q |
| |
|
|||||||| |||||||| || |||||||| ||||||||||||| |||||||| |
|
|
| T |
26970148 |
tctagagaaatatttgtttctagacatgtagcttttcatgaaacatttcttcc |
26970200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 28519660 - 28519593
Alignment:
| Q |
70 |
tctttttggtcatatgctattctt-catgctgtgttcctaatcaacagagttcctactcctattcttca |
137 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| || || ||||| ||||| ||||||||| ||||||| |
|
|
| T |
28519660 |
tctttttggtcatatgct-ttcttacatgctgtctttctcatcaatagagtacctactcctgttcttca |
28519593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0669 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0669
Description:
Target: scaffold0669; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 254
Target Start/End: Original strand, 236 - 427
Alignment:
| Q |
68 |
cttctttttggtcatatgctattcttcatgctgtgttcctaatcaacagagttcctactcctattcttcataatcagtcaccttattttgtcttgcatca |
167 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||| || || ||||| ||||| ||||| ||| | || | || || |||||||||||| || ||||| | |
|
|
| T |
236 |
cttccttttgatcatatgttattcttcatgctgtctttctcatcaatagagtccctacacctttgctcaaaaaccactcaccttattttttcatgcataa |
335 |
T |
|
| Q |
168 |
ccagt-----gctctcaatttgtttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagag |
254 |
Q |
| |
|
| ||| | |||||| ||||||||||||||||||| | ||||| | ||| || ||| ||||||| ||||| ||||| |||||||||| |
|
|
| T |
336 |
caagttacctgacctcaatctgtttaaagtgtttggttgtgtatgttagggttcaacacttaaatctcatagaaccaaattacaacctagag |
427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1416 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1416
Description:
Target: scaffold1416; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 1100 - 1030
Alignment:
| Q |
185 |
tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagc |
255 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||| |||||| |||| | ||||||||| ||| ||||||| |
|
|
| T |
1100 |
tttaaagtttttggttgcctttgttatgcttctacacttcaagctcatataacaaaattacaatctagagc |
1030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1416; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1289 - 1228
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaact |
62 |
Q |
| |
|
||||| || ||||||| ||| ||||||||||| | ||||||||| || |||||||||||||| |
|
|
| T |
1289 |
gtagagagaaaacacctacacattctcaatgttgctagagctttgttgtttcaatccaaact |
1228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 170054 - 169925
Alignment:
| Q |
7 |
aggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcat-atgctattcttcatgctgtgttc |
105 |
Q |
| |
|
|||||||||||||||||| | ||||| || |||||| | |||||||| |||||||| || ||| || |||||| | ||| | | ||||||||||| ||| |
|
|
| T |
170054 |
aggaaacaccaacatattttaaatgttggaagagctcttttatttcagtccaaacttcccacttgttattggtcttaatgttgtgcttcatgctgttttc |
169955 |
T |
|
| Q |
106 |
ctaatcaacagagttcctactcctattctt |
135 |
Q |
| |
|
| ||||| |||||| |||||||| ||||| |
|
|
| T |
169954 |
ttgatcaatagagttactactcctcttctt |
169925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0088 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 52634 - 52695
Alignment:
| Q |
1 |
gtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaact |
62 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| ||||| ||| | |||||||| ||||| |
|
|
| T |
52634 |
gtagaaaggaaacataaacatatcctcaatgtaggcagagccttactttttcaatctaaact |
52695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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