View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_25 (Length: 395)
Name: NF19828_low_25
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 9212578 - 9212889
Alignment:
| Q |
10 |
atgaatgtgatttatttatgattagtttgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatactttcacccataaatatccaggtata |
109 |
Q |
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| T |
9212578 |
atgaatgtaatttatttatgattagtttgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatactttcacccataaatatccaggtata |
9212677 |
T |
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| Q |
110 |
tatataaaatttacaatttatctatttttcttattactaaagatttacaatttgatatttgatattttcataagcataataatttacaatttgtgtaact |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9212678 |
tatataaaatttacaatttatctatttttcttattactaaagatttacaattttcaatttgatattttcataagcataataatttacaatttgtgtaact |
9212777 |
T |
|
| Q |
210 |
ttaattgacatgcagaaaagatcaaagatagaagcaatgcagatgtagccattgattcatatcacaattacaaggtacactagcttcaaagtatatattt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9212778 |
ttaattgacatgcagaaaagatcaaagatagaagcaatgcagatgtagccattgattcatatcacaattacaaggtacactagcttcaaagtatatattt |
9212877 |
T |
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| Q |
310 |
gtgttttcttac |
321 |
Q |
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||| |||||||| |
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| T |
9212878 |
gtgctttcttac |
9212889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 25161026 - 25160932
Alignment:
| Q |
192 |
tttacaatttgtgtaactttaattgacatgcagaaaagatcaaagatagaagcaatgcagatgtagccattgattcatatcacaattacaaggta |
286 |
Q |
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| T |
25161026 |
tttacaatttgtacaacttggattgacatgcagaaaagatcaaggatggaagcaatggagatgtagccattgacacatatcaccaatacaaggta |
25160932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 25161162 - 25161078
Alignment:
| Q |
24 |
tttatgattagtttgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatactttcacccataaatatccaggtat |
108 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || || || |||| |||||| ||||| |
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| T |
25161162 |
tttatgattagttcgaaggtgcagcaacagaaggtggtagaacaccaagtatatgggacacctttactcatagatatcctggtat |
25161078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 25181135 - 25181070
Alignment:
| Q |
37 |
tgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatactttcacccataaatatcc |
102 |
Q |
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| T |
25181135 |
tgaaggtgcagcaagtgaaggtggaagaggagcaagtatatgggatactttcactcatagatatcc |
25181070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 25251907 - 25251972
Alignment:
| Q |
37 |
tgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatactttcacccataaatatcc |
102 |
Q |
| |
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|||||||||||||| ||||||||| ||| | |||||||||||||||||||||| |||| |||||| |
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| T |
25251907 |
tgaaggtgcagcaagtgaaggtggaagaggagcaagtatatgggatactttcactcatagatatcc |
25251972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 25193181 - 25193107
Alignment:
| Q |
32 |
tagtttgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatactttcacccataaatatccaggt |
106 |
Q |
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|||||||||||||||| ||| |||||||||||| ||||||||| ||||| || ||||| ||| || |||||||| |
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| T |
25193181 |
tagtttgaaggtgcagtaaaggaaggtggtagaggaccaagtatctgggacaccttcactcatcaacatccaggt |
25193107 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 25169347 - 25169282
Alignment:
| Q |
37 |
tgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatactttcacccataaatatcc |
102 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||| |||||||| ||||| |||| |||||| |
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| T |
25169347 |
tgaaggtgcagcaagtgaaggtggaagaggaccaagtatttgggatacattcactcatagatatcc |
25169282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 25048560 - 25048486
Alignment:
| Q |
32 |
tagtttgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatactttcacccataaatatccaggt |
106 |
Q |
| |
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|||| ||||||||||||||| ||| ||| | | ||||||||| |||||||||||| | ||||||||||||||| |
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| T |
25048560 |
tagtatgaaggtgcagcaaaaaaagatggaaaaggaccaagtatttgggatactttcgctcataaatatccaggt |
25048486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 29421026 - 29421102
Alignment:
| Q |
31 |
ttagtttgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatactttcacccataaatatccaggta |
107 |
Q |
| |
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||||| |||||||||||||||| ||||| | | |||||||||||||||||||||||| ||||| |||||||||| |
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| T |
29421026 |
ttagtatgaaggtgcagcaaatattggtggaaaaggaccaagtatatgggatactttcacgcataattatccaggta |
29421102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 29462190 - 29462151
Alignment:
| Q |
67 |
accaagtatatgggatactttcacccataaatatccaggt |
106 |
Q |
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| T |
29462190 |
accaagtatatgggatactttcacacataattatccaggt |
29462151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 29405159 - 29405233
Alignment:
| Q |
32 |
tagtttgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatactttcacccataaatatccaggt |
106 |
Q |
| |
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|||| ||||||||||||||||| ||||| ||| |||||| ||||||||| ||| ||| ||||| ||||||||| |
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| T |
29405159 |
tagtatgaaggtgcagcaaatgttggtggcagaggaccaagcatatgggatgcttacactcataattatccaggt |
29405233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 14331907 - 14331958
Alignment:
| Q |
33 |
agtttgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatac |
84 |
Q |
| |
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|||||||||||||||||||||||| |||||| | |||||| ||||||||||| |
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|
| T |
14331907 |
agtttgaaggtgcagcaaatgaagatggtaggaaaccaagcatatgggatac |
14331958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 25329977 - 25329926
Alignment:
| Q |
33 |
agtttgaaggtgcagcaaatgaaggtggtagaacaccaagtatatgggatac |
84 |
Q |
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|||||||||||||||||||||||| ||| || | |||||| ||||||||||| |
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| T |
25329977 |
agtttgaaggtgcagcaaatgaagatggcaggaaaccaagcatatgggatac |
25329926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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