View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_26 (Length: 395)
Name: NF19828_low_26
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 26051573 - 26051202
Alignment:
| Q |
15 |
tatacagagatagaaaaacagataatttagaaacacatatataaaattcaaaggaaacaaatttattaaaactgnnnnnnntga-------ctgatagtt |
107 |
Q |
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||||| ||||| |||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||||| || ||||||||| |
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| T |
26051573 |
tatactgagatgtaaaaacagataattcagaaacgcatatataaaattcaaagggaacagatttattaaaactgaaaagaaagaaaaaaaactgatagtt |
26051474 |
T |
|
| Q |
108 |
aagtagtcttaggggatgcaaatctaatcagaaacactaagaacgaaaagcccctgatcgcagtaccctttcccaaccaatacattgttctttgacatga |
207 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |
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| T |
26051473 |
aaatagtcttaggggatgcaaacctaatcagaaacactaagaacaaaaagcccctgatcacagtaccctttcccaacaaatactttgttctttgacatga |
26051374 |
T |
|
| Q |
208 |
ccatcttatcggactcaaacgacactttaacacctactttgtttaacaatgctacagaaatcaaattggtcctaatggtaggcacatgtagcacatcact |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26051373 |
ccatcttatcggactcaaacgacactttaacacctactttgtttaacagtgctacagaaatcaaattggtcctaatggtaggcacatgtagcacatcact |
26051274 |
T |
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| Q |
308 |
caaagccaaggttttgccggaagtgagcttcagaattactttgcctttgccattcaacgcagcggttcttga |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26051273 |
caaagccaaggttttgccggaagtgagcttcagaattactttgcctttgccattcaccgcagcggttcttga |
26051202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 27076589 - 27076220
Alignment:
| Q |
15 |
tatacagagatagaaaaacagataatttagaaacacatatataaaattcaaaggaaacaaatttattaaaactgnnnnnnntga-----ctgatagttaa |
109 |
Q |
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||||| ||||| ||||| ||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||| || ||||||||||| |
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| T |
27076589 |
tatactgagatgtaaaaatagagaatttagaaacgcatatataaaattcaaagggaacagatttattaaaactgaaaagaaagaaaaaactgatagttaa |
27076490 |
T |
|
| Q |
110 |
gtagtcttaggggatgcaaatctaatcagaaacactaagaacgaaaagcccctgatcgcagtaccctttcccaaccaatacattgttctttgacatgacc |
209 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
27076489 |
atagtcttaggggatgcaaacctaatcagaaacactaagaacaaaaagcccctgatcacagtacccgttcccaacaaatacattgttctttgacatgacc |
27076390 |
T |
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| Q |
210 |
atcttatcggactcaaacgacactttaacacctactttgtttaacaatgctacagaaatcaaattggtcctaatggtaggcacatgtagcacatcactca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27076389 |
atcttatcggactcaaacgacactttaacacctactttgtttaatagtgctacagaaatcaaattggtcctaatggtaggcacatttagcacatcactca |
27076290 |
T |
|
| Q |
310 |
aagccaaggttttgccggaagtgagcttcagaattactttgcctttgccattcaacgcagcggttcttga |
379 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
27076289 |
aagccaaggtttttccggaagtgagcttcagaattactttgcctttgccattcaccgcagtggttcttga |
27076220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 111 - 369
Target Start/End: Original strand, 14633368 - 14633626
Alignment:
| Q |
111 |
tagtcttaggggatgcaaatctaatcagaaacactaagaacgaaaagcccctgatcgcagtaccctttcccaaccaatacattgttctttgacatgacca |
210 |
Q |
| |
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|||||| ||| |||||||| |||||| |||||||||||||| || ||||||||||| || ||||||||| ||| |||||||| ||||||| ||||||| |
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| T |
14633368 |
tagtctaaggagatgcaaaactaatcggaaacactaagaacaaatagcccctgatcacaataccctttctcaataaatacattattctttgtaatgacca |
14633467 |
T |
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| Q |
211 |
tcttatcggactcaaacgacactttaacacctactttgtttaacaatgctacagaaatcaaattggtcctaatggtaggcacatgtagcacatcactcaa |
310 |
Q |
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|||||||| | ||||| ||||||||||| |||||||||||||||| ||||||| |||| || ||||||||||| ||||| ||||||| |||||| ||||| |
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| T |
14633468 |
tcttatcgaattcaaatgacactttaactcctactttgtttaacagtgctacataaattaatttggtcctaatagtagggacatgtatcacatcgctcaa |
14633567 |
T |
|
| Q |
311 |
agccaaggttttgccggaagtgagcttcagaattactttgcctttgccattcaacgcag |
369 |
Q |
| |
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| |||| || ||||| ||| | |||||||||| ||||||||||||| |||| ||||||| |
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| T |
14633568 |
atccaaagtcttgcctgaaataagcttcagaagtactttgcctttgtcattaaacgcag |
14633626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 32894282 - 32894133
Alignment:
| Q |
16 |
atacagagatagaaaaacagataatttagaaacacatatataaaattcaaaggaaacaaatttattaaaactg---nnnnnnntgactgatagttaagta |
112 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| | |
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| T |
32894282 |
atacagagatagaaaaacagataattcagaaacacatatataaaattcaaagggaacagatttattaaaactgaaaaaaaaaatgactgatagttaagga |
32894183 |
T |
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| Q |
113 |
gtcttaggggatgcaaatctaatcagaaacactaagaacgaaaagcccct |
162 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
32894182 |
gtcttaggggatgcaaacctaatcagaaacactaagaacaaaaagcccct |
32894133 |
T |
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