View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_28 (Length: 376)
Name: NF19828_low_28
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 32 - 357
Target Start/End: Complemental strand, 24711692 - 24711366
Alignment:
| Q |
32 |
tcataaaatggactggaagaggt-atgttcaaacaagggtagtaacattgagaacaaaaatagcacggtcagtgatagtggttcttgcggaaaattcact |
130 |
Q |
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| T |
24711692 |
tcataaaatggactggaagaagtcatgttcaaacaagggtagtaacattgagaacaaaaatagcatggtcagtgatagtggtaattacggaaaattcact |
24711593 |
T |
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| Q |
131 |
tacactgtgttgattttgaatgacataatatgatgtgcagatgatgtgaaagttaattaaggacaaaaatatcattacggatcatatgaaaatgagtaat |
230 |
Q |
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| T |
24711592 |
tacactgtgttgattttgaatgacttaatatgatgtgcagatgatgtgaaagttaattaaggacaaaaatatcattacggatcatatgaaaatgagtaat |
24711493 |
T |
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| Q |
231 |
aaggaattggaggagtttatctgcacaatatcgtttggagatgaccctgggatggttggttctggttatgtcaaaatagttgattaatttaacaaatact |
330 |
Q |
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| T |
24711492 |
aaggaattggaggagtttatccgcacaatatcgtttggagatgaccctgggatggttggttctggttatgtcaaaatagttgatccatttaacaaatact |
24711393 |
T |
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| Q |
331 |
ctagtctacggtgtttcttcttaaacg |
357 |
Q |
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| T |
24711392 |
ctagtctacggtgtttcttcttaaacg |
24711366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 32 - 313
Target Start/End: Complemental strand, 24716042 - 24715773
Alignment:
| Q |
32 |
tcataaaatggactggaagaggt-atgttcaaacaagggtagtaacattgagaacaaaaatagcacggtcagtgatagtggttcttgcggaaaattcact |
130 |
Q |
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| T |
24716042 |
tcataaaatggactggaaaaagttaggttcaaacaagggtaatga---tgagagcaaaaatagcaagatcagtaatagtggtacttgcggcaaattcact |
24715946 |
T |
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| Q |
131 |
tacactgtgttgattttgaatgacataatatgatgtgcagatgatgtgaaagttaattaaggacaaaaatatcattacggatcatatgaaaatgagtaat |
230 |
Q |
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| T |
24715945 |
tccgctgcgttgattttcaatgacttaatatgctgtgcagatgatgtgaaaatt-ctcaaggacaagaatatcattgtggatcatatgaaaatgagtaat |
24715847 |
T |
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| Q |
231 |
aaggaattggaggagtttatctgcacaatatcgtttggagatgaccctgggatggttggttctggttatgtcaaaatagttga |
313 |
Q |
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| T |
24715846 |
a---------aggagtttatccgcacaatgtcatctggagttgaccatggaatagttggttctgattatgtcaaaatggttga |
24715773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 333
Target Start/End: Complemental strand, 24807100 - 24806907
Alignment:
| Q |
139 |
gttgattttgaatgacataatatgatgtgcagatgatgtgaaagttaattaaggacaaaaatatcattacggatcatatgaaaatgagtaataaggaatt |
238 |
Q |
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| T |
24807100 |
gttgattttcaatgacttaatctgctgtgcagatgatgtgaaacttc-tcaagaacaagaatatcatcgtgggtcatatgaaaatgagtaataaggagtt |
24807002 |
T |
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| Q |
239 |
ggaggagtttatctgcacaatatcgtttggagatgaccctgggatggttggttctggttatgtcaaaatagttgattaatttaacaaatactcta |
333 |
Q |
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| T |
24807001 |
ggaggagtgtatgcgcacagtgtcgtctggagttgaccatggagtagttggttctggttattttaaaatggtagatgatttgaacaactactcta |
24806907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24711806 - 24711774
Alignment:
| Q |
1 |
gattaaatgtcactaacacaagttcgacacgtc |
33 |
Q |
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| T |
24711806 |
gattaaatgtcactaacacaagttcgacacgtc |
24711774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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