View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_29 (Length: 375)
Name: NF19828_low_29
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 42638426 - 42638099
Alignment:
| Q |
17 |
aacaattttataaatccaatcaaattttctttaatgtaatatatttgaattagggttggcttcagaaagattctctcaactcattccctctctcaactaa |
116 |
Q |
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| T |
42638426 |
aacaattttataattccgatcaaattttctttaatgt--tacacttgaattagggttggcttcagaaagattctctcaactcattc-------------- |
42638343 |
T |
|
| Q |
117 |
ttcccttcttcttgaagtcaagatggagaaatcagtgatcgctgctgatggaaaggtaaacaatcatatacatgatgatattgccatcattattctgtca |
216 |
Q |
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|||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42638342 |
---ccttctacttgaagtaaagatggagaaatcagtgatcgcagctgatggaaaggtgaacaatcatatacatgacgatattgccatcattattctgtca |
42638246 |
T |
|
| Q |
217 |
aagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagagaatccttatttcaagaccatgtttcgaagaaatt |
316 |
Q |
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| T |
42638245 |
aagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagataatccttatttcaagaccatgtttcgaagaaatt |
42638146 |
T |
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| Q |
317 |
tcttatataagaatcattcttattacactgatacatctctcttccta |
363 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42638145 |
tcttatataagaatcattcttattacaatgatacatctctcttccta |
42638099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 331
Target Start/End: Complemental strand, 42630575 - 42630450
Alignment:
| Q |
206 |
ttattctgtcaaagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagagaatccttatttcaagaccatgtt |
305 |
Q |
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| T |
42630575 |
ttattttgtcaaaacttcctcttaaatctttgtttcgatttggttgtgtgcgtaaatcatggtctcttttgtttaaaaattcttatttcatgaacatgtt |
42630476 |
T |
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| Q |
306 |
tcgaagaaatttcttatataagaatc |
331 |
Q |
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||||| |||||||||| ||||||| |
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| T |
42630475 |
tcgaaagaatttcttatccaagaatc |
42630450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 364
Target Start/End: Complemental strand, 9576334 - 9576242
Alignment:
| Q |
272 |
tcttgttagagaatccttatttcaagaccatgtttcgaagaaatttcttatataagaatcattcttattacactgatacatctctcttcctat |
364 |
Q |
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| T |
9576334 |
tcttgtttgaaaacccttatttcatgagcatgtttaggaggaatttcttatacaaggatcattcttattacaatgatacatctttcctcctat |
9576242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 357
Target Start/End: Complemental strand, 3368809 - 3368620
Alignment:
| Q |
168 |
aaaggtaaacaatcatatacatgatgatattgccatcattattctgtcaaagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttgg |
267 |
Q |
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|||||| | |||||| ||| ||||||| ||||| || | |||||||| || || ||||| ||||| ||| ||||||| |||||||||||||||| ||| |
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| T |
3368809 |
aaaggttagcaatcacatatatgatgacgttgccttcgtcattctgtctaaattacctctcaaatctttgtttcgatttcgttgtgtgcgtaaatcatgg |
3368710 |
T |
|
| Q |
268 |
tctttcttgttagagaatccttatttcaagaccatgtttcgaagaaatttcttatataagaatcattcttattacactgatacatctctc |
357 |
Q |
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||| |||| || || || |||||||||| | |||||| ||||||| ||| |||| |||||||||||||||||||| ||||||||||||| |
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| T |
3368709 |
tctctcttatttgaaaacccttatttcatggacatgttccgaagaatttttttatctaagaatcattcttattacaatgatacatctctc |
3368620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 343
Target Start/End: Original strand, 5441524 - 5441660
Alignment:
| Q |
207 |
tattctgtcaaagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagagaatccttatttcaagaccatgttt |
306 |
Q |
| |
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|||| ||||||| |||||| | ||||| |||| ||| ||||| || || || ||||| |||||| |||| || | |||| |||||||| || |||||| |
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| T |
5441524 |
tattttgtcaaaattgcctgtgaaatcattgaatcgttttggatgcgtacgcaaatcgtggtctatcttatttaaaaatcgttatttcatgagcatgttc |
5441623 |
T |
|
| Q |
307 |
cgaagaaatttcttatataagaatcattcttattaca |
343 |
Q |
| |
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|| | |||||| |||| |||||||||||||||||||| |
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| T |
5441624 |
cgcaaaaatttattatgtaagaatcattcttattaca |
5441660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 343
Target Start/End: Original strand, 5450534 - 5450670
Alignment:
| Q |
207 |
tattctgtcaaagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagagaatccttatttcaagaccatgttt |
306 |
Q |
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| T |
5450534 |
tattttgtcaaaattgcctgtgaaatcattgaatcgttttggatgcgtacgcaaatcgtggtctatcttatttaaaaatcgttatttcatgagcatgttc |
5450633 |
T |
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| Q |
307 |
cgaagaaatttcttatataagaatcattcttattaca |
343 |
Q |
| |
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|| | |||||| |||| |||||||||||||||||||| |
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| T |
5450634 |
cgcaaaaatttattatgtaagaatcattcttattaca |
5450670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 356
Target Start/End: Original strand, 45865940 - 45866117
Alignment:
| Q |
179 |
atcatatacatgatgatattgccatcattattctgtcaaagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgtt |
278 |
Q |
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|||| ||| |||||||| ||||| | ||||||| ||||| |||||||| ||||| |||| | |||| |||||| |||||||| ||||| | || || |
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| T |
45865940 |
atcacatatatgatgatgttgccttggttattctctcaaaattgcctctcaaatctttgattagattccgttgtgcacgtaaatcacggtctcttttatt |
45866039 |
T |
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| Q |
279 |
agagaatccttatttcaagaccatgtttcgaagaaatttcttatataagaatcattcttattacactgatacatctct |
356 |
Q |
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| T |
45866040 |
cgaaaactcttatttcatggacatgttttaaagaaatttactatctaatgatcattcttattacgatgatacatctct |
45866117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 21379441 - 21379334
Alignment:
| Q |
168 |
aaaggtaaacaatcatatacatgatgatattgccatcattattctgtcaaagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttgg |
267 |
Q |
| |
|
|||||||||||| || ||||||||||||| | | || |||||| || ||||| ||||||||||| |||| |||||||| || || |||||||| ||| |
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| T |
21379441 |
aaaggtaaacaactatttacatgatgatatagtcttctctattctatcgaagttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatgg |
21379342 |
T |
|
| Q |
268 |
tctttctt |
275 |
Q |
| |
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||| |||| |
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| T |
21379341 |
tctctctt |
21379334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 34287656 - 34287727
Alignment:
| Q |
286 |
ccttatttcaagaccatgtttcgaagaaatttcttatataagaatcattcttattacactgatacatctctc |
357 |
Q |
| |
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| T |
34287656 |
ccttatttcatgaacatctttcgaagaaatttcttatccaatgatcattcatattacaacgatacatctctc |
34287727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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