View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_3 (Length: 793)
Name: NF19828_low_3
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 634; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 20 - 783
Target Start/End: Complemental strand, 30200080 - 30199313
Alignment:
| Q |
20 |
gtttatacacttatccaatattgagatattgcatctctgttttgttattagcttctttcaactagatttcattatagccctatagctattttagaatctg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30200080 |
gtttatacacttatccaatattgagatattgcatctctgttttgttattagcttctttcaactagatttcattatagcccaatagctattttagaatctg |
30199981 |
T |
|
| Q |
120 |
ggcttggcctactggaacaatttggactgttgttagctttcagttgcacctagtgatgtcactgtcatgctgcgtttgtccatattcaaacacttaatag |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
30199980 |
ggcttggcctactggaacaatttggactgttgttagctttcagttacacctagtgatgtcactggcatgctgcgtttgtccagattcaaacacttaatag |
30199881 |
T |
|
| Q |
220 |
gttgaactggttcaagcatactattcacatttgcttgattcgaattgcttaattcaaacattttttaatgtcttgattctaaactgcaaggtgctaacca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30199880 |
gttgaactggttcaagcatactattcacatttgcttgattcgaattgcttaattcaaacattttttaatgtcttgattctaaactgcaaggtgctaacca |
30199781 |
T |
|
| Q |
320 |
agtcactccagtaattgtaatctaacatattaattgtcatctaactgtttttacttgttgaattttaaaagtttagattttctacctatttcagaacctg |
419 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30199780 |
agtcactctagtaattgtaatctgacatattaattgtcatctaactgtttttacttgttgaattttaaaagtttagattttctacctatttcagaacctg |
30199681 |
T |
|
| Q |
420 |
ttactgtatcatacttgtcctgtcatatcaaaagattgttattgatattgtgtgttgttttttgaggaataattatgaacnnnnnnnnngttgtccacac |
519 |
Q |
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| T |
30199680 |
ttactgtatcatacttgtcctgtcatatcaaaagattgttattgatattgtgtattgttttttgaggaatgattatgaacaaaaaaaaagttgtccacac |
30199581 |
T |
|
| Q |
520 |
catattttagtacg-gtaatagcacaaagttaatannnnnnnattgtcttgaaatgcgtgctagcctataattccttcataaagtgatacggtgttggaa |
618 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30199580 |
catattttagtacgtttaatagcacaaagttaatatttttttattgtcttgaaatgcgtgctagcctataattccttcataaagtgatacggtgttggaa |
30199481 |
T |
|
| Q |
619 |
ttggttgttgaattttgattgtcaatatatcattgctcttg---nnnnnnnnacctgattgctgcttcttttgctaaaaggtgaagaaaatgattatata |
715 |
Q |
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| T |
30199480 |
ttggttgttgaattttgattgtcaatatatcattgctcttgtttttttttttacctgattgctgcttcttttggtaaaaggtgaagaaaatgattatata |
30199381 |
T |
|
| Q |
716 |
tgctatggttgatttggtcaagaagttggagaaagcaaggttagtaattgcaaactttaggccctatg |
783 |
Q |
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| T |
30199380 |
tgctatggttgatttggtcaagaagttggagaaagcaaggttagtaattgcaaactttaggccctatg |
30199313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 673 - 772
Target Start/End: Original strand, 51507606 - 51507704
Alignment:
| Q |
673 |
attgctgcttcttttgctaaaaggtgaagaaaatgattatatatgctatggttgatttggtcaagaagttggagaaagcaaggttagtaattgcaaactt |
772 |
Q |
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|||||||||||||| | | ||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| |||||||||| |
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| T |
51507606 |
attgctgcttctttgg-tcaaaggtgaagaaaatgattatatatgctatgcttgaactggtggagaagttggagaaagcaaggttagtggttgcaaactt |
51507704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 51506973 - 51507080
Alignment:
| Q |
20 |
gtttatacacttatccaatattgagatattgcatct-ctgttttgttattagcttctttcaactagattt-cattatagccctatagctattttagaatc |
117 |
Q |
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| T |
51506973 |
gtttatacacttgtccaatattgagatattgcatgtcctatttcgtcgttagcttctttcaactaggtttatattatagcctaatagcagttttagaatt |
51507072 |
T |
|
| Q |
118 |
tgggcttg |
125 |
Q |
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| T |
51507073 |
tgggcttg |
51507080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 685 - 772
Target Start/End: Original strand, 51487085 - 51487173
Alignment:
| Q |
685 |
tttgctaaaaggtgaagaaaatgattatatatgctatggttgatttggtcaagaagttggagaaagc-aaggttagtaattgcaaactt |
772 |
Q |
| |
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|||| ||| ||||||||||||||| ||||||||||||| ||||| |||| || || ||||||||| | ||||||| | ||||||||||| |
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| T |
51487085 |
tttggtaacaggtgaagaaaatgactatatatgctatgcttgatgtggttaacaaattggagaaaacaaaggttactgattgcaaactt |
51487173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 689 - 767
Target Start/End: Complemental strand, 20865075 - 20864997
Alignment:
| Q |
689 |
ctaaaaggtgaagaaaatgattatatatgctatggttgatttggtcaagaagttggagaaagcaaggttagtaattgca |
767 |
Q |
| |
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|||| |||||||||||||||||||| |||||||| ||||| |||| | ||||||||||| ||||||||||| |||||| |
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| T |
20865075 |
ctaacaggtgaagaaaatgattatacatgctatgcttgatgtggtagaaaagttggagaaggcaaggttagtgattgca |
20864997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 673 - 754
Target Start/End: Original strand, 27401834 - 27401914
Alignment:
| Q |
673 |
attgctgcttcttttgctaaaaggtgaagaaaatgattatatatgctatggttgatttggtcaagaagttggagaaagcaag |
754 |
Q |
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| T |
27401834 |
attgctgcttcttttg-taacaggtgaagaaaatgatcgtatatactatgatcgatgtggtcaaaaagttggagaaagcaag |
27401914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 20865470 - 20865391
Alignment:
| Q |
179 |
cactgtcatgctgcgtttgtccatattcaaacactta-ataggttgaactggttcaagcatactattcacatttgcttga |
257 |
Q |
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|||||||||||||| |||||||| || | ||| |||| || ||||||| ||||||||||||| |||||| |||| ||||| |
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| T |
20865470 |
cactgtcatgctgcatttgtccaaatccgaacgcttatattggttgaaatggttcaagcatattattcatatttccttga |
20865391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 735
Target Start/End: Original strand, 5179409 - 5179470
Alignment:
| Q |
673 |
attgctgcttcttttgctaaaaggtgaagaaaatgattatatatgctatggttgatttggtca |
735 |
Q |
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| T |
5179409 |
attgctgcttctttgg-tgacaggtgaagaaaatgattatatacactatggttgatgtggtca |
5179470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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