View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_32 (Length: 355)
Name: NF19828_low_32
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 22625843 - 22625523
Alignment:
| Q |
19 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22625843 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
22625744 |
T |
|
| Q |
119 |
aaaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgtaatattcaaattcaaaaccttttctttggtgacattca |
218 |
Q |
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| T |
22625743 |
acaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgcaatattcaaatacaaaaccttttctttggtgacattca |
22625644 |
T |
|
| Q |
219 |
gaaccacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
318 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22625643 |
gaaccacttcttttaccgaactagggttttttacgccaaattccttgaacaggctaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
22625544 |
T |
|
| Q |
319 |
agttatgacaaatgtagctac |
339 |
Q |
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||||||||||||||||||||| |
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| T |
22625543 |
agttatgacaaatgtagctac |
22625523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 22633327 - 22633647
Alignment:
| Q |
19 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22633327 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
22633426 |
T |
|
| Q |
119 |
aaaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgtaatattcaaattcaaaaccttttctttggtgacattca |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
22633427 |
aaaaatagtaattgtaatcgatcaaaaattgaagagagaagttataacttataaacaaacgcaatattcaaatacaaaaccttttctttggtgaaattca |
22633526 |
T |
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| Q |
219 |
gaaccacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
318 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22633527 |
gaaccacttcttttaccgaactagggttttttatgccaaattcctcgaacagactaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
22633626 |
T |
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| Q |
319 |
agttatgacaaatgtagctac |
339 |
Q |
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|||||||||||| |||||||| |
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| T |
22633627 |
agttatgacaaaagtagctac |
22633647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 185 - 335
Target Start/End: Complemental strand, 22623363 - 22623212
Alignment:
| Q |
185 |
ttcaaattcaaaaccttttctttggtgacattcagaaccacttcttttactgaactagggtttttt-atgccaaattccttgaacaggctaaagcttgta |
283 |
Q |
| |
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||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||||| |||||||||||| |
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| T |
22623363 |
ttcaaatacaaaatcttttctttagtgacattcagaaccacttcttttaccgaactagggtttttttatgccaaactcgttgaacaaactaaagcttgta |
22623264 |
T |
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| Q |
284 |
tagtcaatacagtttggcttgatagtgagatcatcagttatgacaaatgtag |
335 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
22623263 |
taggcaatacaatttggcttgatagtgagatcatcagttatgacaaaagtag |
22623212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 23354866 - 23354940
Alignment:
| Q |
41 |
atggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacct |
115 |
Q |
| |
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|||||||||| ||||| || |||||||||| |||||||||||||||||||| |||||| | ||||| ||||||| |
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| T |
23354866 |
atggtttcttttctagaaagaaatctgtcagagttgacttggaaagcaaagcacactttaaaagatcgagtacct |
23354940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 23366406 - 23366321
Alignment:
| Q |
33 |
ctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
118 |
Q |
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|||||||||||||||||| ||| || ||||| |||||||| ||||| || | ||||||||| || | || |||||||||||||| |
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| T |
23366406 |
ctcaagggatggtttctttcctaaaaagaaatcggtcaaagtagacttcgacaacaaagaacattttaacaaatcaagtacctata |
23366321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 336
Target Start/End: Complemental strand, 23366186 - 23366038
Alignment:
| Q |
188 |
aaattcaaaaccttttctttggtgacattcagaaccacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagcttgtatagt |
287 |
Q |
| |
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|||| ||||||||||||| | ||||| || |||| || ||| || || ||||| | ||||| ||| |||||||||| || || | ||| |||| |||| |
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| T |
23366186 |
aaatgcaaaaccttttctatagtgactttaagaatcatttccttcaccgaacttgtgttttctattccaaattcctggagaagcccaaaacttgcgtagt |
23366087 |
T |
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| Q |
288 |
caatacagtttggcttgatagtgagatcatcagttatgacaaatgtagc |
336 |
Q |
| |
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||||| | |||||| ||||| | |||||||| ||||| ||||| ||||| |
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| T |
23366086 |
caatagaatttggcatgataatcagatcatcggttattacaaaagtagc |
23366038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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