View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19828_low_38 (Length: 321)
Name: NF19828_low_38
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 23 - 305
Target Start/End: Complemental strand, 47599415 - 47599133
Alignment:
| Q |
23 |
acatctcctaccattgtcttcaaaacacatgagccttgtcgtaacattggatccaatgtattgtaattgacattaaactcatcaaataaaatatcattta |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47599415 |
acatctcctaccattgtcttcaaaacacatgagccttgtcgtaacattggatccaatgtattgtaattgacattaaactcatcaaataaaatatcattta |
47599316 |
T |
|
| Q |
123 |
agtcacgcttcttagcaccatcgataaaatccttcgcttccttctcattcattccgcgttcaacaagtcgccaaaagcattgatcatattgatttttcaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47599315 |
agtcacgcttcttagcaccatcgataaaatccttcgcttccttctcattcattccgtgttcaacaagtcgccaaaagcattgatcatattgattcttcaa |
47599216 |
T |
|
| Q |
223 |
atgacagatattttgcctccacgaaagatatgcttgaagggcatctatagctgcacaaggtatgactttcccatggaaagaag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47599215 |
atgacagatattttgcctccacgaaagatatgcttgaagggcatctatagctgcacaaggtatgactttcccatggaaagaag |
47599133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University