View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19828_low_39 (Length: 317)

Name: NF19828_low_39
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19828_low_39
NF19828_low_39
[»] chr7 (3 HSPs)
chr7 (213-317)||(44002399-44002500)
chr7 (1-64)||(44002529-44002592)
chr7 (12-50)||(3799401-3799439)
[»] chr8 (3 HSPs)
chr8 (12-143)||(12268451-12268583)
chr8 (19-85)||(7754835-7754901)
chr8 (12-87)||(37046644-37046719)
[»] chr1 (2 HSPs)
chr1 (12-87)||(8115632-8115707)
chr1 (12-87)||(50371538-50371613)
[»] chr4 (2 HSPs)
chr4 (12-143)||(9925507-9925639)
chr4 (98-143)||(10390085-10390130)
[»] chr2 (2 HSPs)
chr2 (12-87)||(26261684-26261759)
chr2 (14-76)||(24233409-24233471)
[»] chr5 (2 HSPs)
chr5 (12-87)||(17463247-17463322)
chr5 (25-76)||(4177569-4177620)
[»] chr3 (1 HSPs)
chr3 (41-87)||(29843449-29843495)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 44002500 - 44002399
Alignment:
Q  213 attataaatagccaacctctatcaaactaaaactaaaatgtatttttgcatgtacgtacctacaccataaatatgacgactatatgaagttagatgttgc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  44002500 attataaatagccaacctctatcaaactaaaactaaaatgtatttttgcatgtacgtacctacaccataaatat---gactatatgaagttagatgttgc 44002404  T
Q  313 aatgt 317  Q
    |||||    
T  44002403 aatgt 44002399  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 44002592 - 44002529
Alignment:
Q  1 taattttgttatatatgttggacattgaatgttgactagttttggtatatgttgctaatatatg 64  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  44002592 taattttgttatatatgttggacgttgaatgttgacaagttttggtatatgttgctaatatatg 44002529  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 3799439 - 3799401
Alignment:
Q  12 tatatgttggacattgaatgttgactagttttggtatat 50  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  3799439 tatatgttggacattgaatgttgacaaattttggtatat 3799401  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 12268583 - 12268451
Alignment:
Q  12 tatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttctaca-nnnnnnnnaatcttcctctatac 110  Q
    |||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||| |         | ||||||| ||| |    
T  12268583 tatatgatggacgttgaatgttgacaaattttggtatatgttgctaatatatgcctcctaaattttatgttctaaatttttttttagtcttcctttatgc 12268484  T
Q  111 ctcctaaattgcctcttgggattaaaaagtttt 143  Q
    ||| ||||||||||||| |||||||||||||||    
T  12268483 ctcttaaattgcctcttaggattaaaaagtttt 12268451  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 7754901 - 7754835
Alignment:
Q  19 tggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttcta 85  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||    
T  7754901 tggacgttgaatgttgacaaattttggtatatgttgctaatatatgcctcctaaatttcaggttcta 7754835  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 37046644 - 37046719
Alignment:
Q  12 tatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttctaca 87  Q
    |||||| | ||| |||||||||||| | ||||| ||||||||  |||||||| | |||||||||| ||||||||||    
T  37046644 tatatgctagacgttgaatgttgacaaattttgatatatgtttttaatatattcttcctaaatttcaggttctaca 37046719  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 8115632 - 8115707
Alignment:
Q  12 tatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttctaca 87  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||| | |||||| ||||||||||    
T  8115632 tatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggttctaca 8115707  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 50371538 - 50371613
Alignment:
Q  12 tatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttctaca 87  Q
    |||||||||||   ||||||||||  | ||||||||| |||| |||||||||  ||||||||||| ||||||||||    
T  50371538 tatatgttggatgctgaatgttgataaattttggtatttgttactaatatatatctcctaaatttcaggttctaca 50371613  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 9925507 - 9925639
Alignment:
Q  12 tatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaa-tttgaggttctacannnnnnnnaatcttcctctatac 110  Q
    ||||||||| || |||||||||||| | ||| ||||||||| | |||||||||||||||||| ||| |||||||| |        | |||||||||||||    
T  9925507 tatatgttgaacgttgaatgttgacaaatttaggtatatgtcgttaatatatgcctcctaaatttttaggttctaaatttttttcagtcttcctctatac 9925606  T
Q  111 ctcctaaattgcctcttgggattaaaaagtttt 143  Q
    |||||||||||| |||| |||||| ||||||||    
T  9925607 ctcctaaattgcgtcttaggattagaaagtttt 9925639  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 10390085 - 10390130
Alignment:
Q  98 tcttcctctatacctcctaaattgcctcttgggattaaaaagtttt 143  Q
    ||||||||||| |||||||||||||||||| |||||| ||| ||||    
T  10390085 tcttcctctatgcctcctaaattgcctcttaggattagaaattttt 10390130  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 26261684 - 26261759
Alignment:
Q  12 tatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttctaca 87  Q
    |||||| ||||| |||||||||||| | |||||||||||||||| |||||||||||||||||||| | ||||||||    
T  26261684 tatatggtggacgttgaatgttgacaaattttggtatatgttgccaatatatgcctcctaaatttcaagttctaca 26261759  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 24233471 - 24233409
Alignment:
Q  14 tatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaattt 76  Q
    ||||||||||  |||||||| || | ||||||||||||||||||||||||| |||||||||||    
T  24233471 tatgttggacgatgaatgtttacaaattttggtatatgttgctaatatatgtctcctaaattt 24233409  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 17463247 - 17463322
Alignment:
Q  12 tatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttctaca 87  Q
    ||||||||||   |||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  17463247 tatatgttgggtgttgaatgttgacaaattttggtatatattgctaatatatgcctcctaaattttaggttttaca 17463322  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 4177569 - 4177620
Alignment:
Q  25 ttgaatgttgactagttttggtatatgttgctaatatatgcctcctaaattt 76  Q
    |||||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  4177569 ttgaatgttgacaaattttggtatatgttactaatatatgcctcctaaattt 4177620  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 29843495 - 29843449
Alignment:
Q  41 tttggtatatgttgctaatatatgcctcctaaatttgaggttctaca 87  Q
    ||||||||||||||||| ||||| |||||||||||| | ||||||||    
T  29843495 tttggtatatgttgctactatatacctcctaaatttcaagttctaca 29843449  T

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