View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_43 (Length: 291)
Name: NF19828_low_43
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 3462745 - 3462482
Alignment:
| Q |
11 |
cagagagagcaactaactcatacatagacacagttcaagccgtaaccaccaatcaccttgtcagtgaatctggtgtggcggagtttgtttcagctatggc |
110 |
Q |
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| T |
3462745 |
cagagagagcaactaactcatacatagacacagttcaagccgtaaccaccaatcaccttgtcagtgaatctggtgtggcggagtttgtttcagctatggc |
3462646 |
T |
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| Q |
111 |
ggcaggatggaacgctcagcttatagtggaaacatggtcatgtggcggagttattccaacgagtgttggtttatccatagcaagcggtcacaatggtgga |
210 |
Q |
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| T |
3462645 |
ggcaggatggaacgctcagcttatagtggaaacatggtcatgtggcggagttattccaacgagtgttggtttatccatagcaagcggtcacaatggtgga |
3462546 |
T |
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| Q |
211 |
agacacgtgtgtatagttcctgatgaactctcaagatcagagtatgcaaaaaatatgttagaag |
274 |
Q |
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| T |
3462545 |
agacacgtgtgtatagttcctgatgaactctcaagatcagagtatgcaaaaaatatgttagaag |
3462482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 3452726 - 3452471
Alignment:
| Q |
11 |
cagagagagcaactaactcatacatagacacagttcaagccgtaaccacca---atcaccttgtcagtgaatctggtgtggcggagtttgtttcagctat |
107 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||| || ||||| |||| ||||||| | || || |||| |
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| T |
3452726 |
cagagagagcaacaaactcatacatcgacacagttcaagcgataaccaccatcaatcacctttctagcgaatccggtgcggcggagctggtatcctctat |
3452627 |
T |
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| Q |
108 |
ggcggcaggatggaacgctcagcttatagtggaaacatggtcatgtggcggagttattccaacgagtgttggtttatccatagcaagcggtcacaatggt |
207 |
Q |
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||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3452626 |
ggcagcaggatggaacgctcagctgatagtagaaacatggtcacacggcggagttatcccaacgagtgttggtttatccatagcaagcggtcacacaggt |
3452527 |
T |
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| Q |
208 |
ggaagacacgtgtgtatagttcctgatgaactctcaagatcagagtatgcaaaaaa |
263 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
3452526 |
ggaagacacgtgtgcatagttcctgatgaacaatcaagatcagagtatgcaaaaaa |
3452471 |
T |
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