View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_47 (Length: 268)
Name: NF19828_low_47
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 49976693 - 49976935
Alignment:
| Q |
18 |
ctgatgacaactctagtagagatcaccatgctaaacaacttcttcctgacaccacctccccaccacctggtaattcagtaatttatttaattaattaaat |
117 |
Q |
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| T |
49976693 |
ctgatgacaactctagtagagatcaccatgctaaacaacttctttctgacaccacctccccaccacctggtaattcagtaatttatttaattaattaaat |
49976792 |
T |
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| Q |
118 |
cttcttcttcattagtgatcacataaccaaaacaacataannnnnnnnnnaatttattattttcacaatagcgcaccatgaaaataaaatgaaagactag |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49976793 |
cttcttcttcattagtaatcacataaccaaaacaacataattttttttttaatttattattttcacaatagcgcaccatgaaaataaaatgaaagactag |
49976892 |
T |
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| Q |
218 |
gtcatggnnnnnnncaccatgatacattactctttttcttctc |
260 |
Q |
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| T |
49976893 |
gtcatggtttttttcaccatgatacattactctttttcttctc |
49976935 |
T |
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