View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_50 (Length: 255)
Name: NF19828_low_50
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 21944674 - 21944841
Alignment:
| Q |
71 |
agacgtaaaaagatattaattaccttcaaaacaatagagttaataatttctaaaatatctacaataccaaattataagactatatgagaaaaacatttgt |
170 |
Q |
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| T |
21944674 |
agacgtaaaaagatattaattaccttcaaaacaatagagttaataatttctaaaatatctacaataccaaattataagactatctgagaaaaaca--tgt |
21944771 |
T |
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| Q |
171 |
ctcaaattataaagcgtttatcatatcaatgaaatattaatgatgatttttctattatagctttatttat |
240 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
21944772 |
ctcaaattataaaacgtttatcatatcaatgaaatattaatgatgatttttctattatacccttatttat |
21944841 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 8137893 - 8137956
Alignment:
| Q |
167 |
ttgtctcaaattataaagcgtttatca-tatcaatgaaatattaatgatgatttttctattata |
229 |
Q |
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|||||||||||||||| ||||| || |||||||||| |||||||||| |||||||||||||| |
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| T |
8137893 |
ttgtctcaaattataagtcgttttacaatatcaatgaattattaatgataatttttctattata |
8137956 |
T |
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