View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19828_low_52 (Length: 250)

Name: NF19828_low_52
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19828_low_52
NF19828_low_52
[»] chr3 (6 HSPs)
chr3 (1-239)||(48838535-48838773)
chr3 (19-114)||(38044108-38044206)
chr3 (1-109)||(50904608-50904722)
chr3 (187-239)||(50904860-50904912)
chr3 (189-241)||(50911939-50911991)
chr3 (187-239)||(55084806-55084858)
[»] chr5 (2 HSPs)
chr5 (189-239)||(1754311-1754361)
chr5 (1-45)||(33492942-33492986)
[»] chr4 (7 HSPs)
chr4 (185-239)||(27424580-27424634)
chr4 (187-241)||(27502875-27502929)
chr4 (185-239)||(27505768-27505822)
chr4 (185-239)||(27523469-27523523)
chr4 (185-239)||(27526178-27526232)
chr4 (186-239)||(27476707-27476760)
chr4 (185-233)||(27414370-27414418)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 48838535 - 48838773
Alignment:
Q  1 tatgtcattcatatagacaattttcgcccattttcccaataaagggaataggaaaaatatttactagtgtaaaaatgcttattattcaaaatgtcactac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48838535 tatgtcattcatatagacaattttcgcccattttcccaataaagggaataagaaaaatatttactagtgtaaaaatgcttattattcaaaatgtcactac 48838634  T
Q  101 taatctatgccagtaagctgcatttacagcccagtaagtaataagaaaaaacgattttatgtgcaaggaattgtgaggccacccattcttgaaatgaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48838635 taatctatgccagtaagctgcatttacagcccagtaagttataagcaaaaacaattttatgtgcaaggaattgtgaggccacccattcttgaaatgaaga 48838734  T
Q  201 ttggttcaagtaggacacgggaatcacaaaccgcttcat 239  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  48838735 ttggttcaggtaggacacgggaatcacaaaccgcttcat 48838773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 38044206 - 38044108
Alignment:
Q  19 aattttcgcccattttcccaataaagggaataggaaaaatatttactagtgt---aaaaatgcttattattcaaaatgtcactactaatctatgccagt 114  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||| |||||   |||||||| |||| ||||||||||||| ||||||||||| ||||    
T  38044206 aattttcacccattttcccaataaagggaaaaggaaaaatatttacaagtgtaaaaaaaatgcctattgttcaaaatgtcacgactaatctatgtcagt 38044108  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 50904608 - 50904722
Alignment:
Q  1 tatgtcattcatatagacaatttt-cgcccattttcccaataaagggaataggaaaaatatttactagtgtaaaaat-----gcttattattcaaaatgt 94  Q
    |||||||||||| ||||||||||| | || ||||||||||| | ||||| ||||||||||||||| ||||||||||      || |||| ||||||||||    
T  50904608 tatgtcattcatttagacaatttttcacctattttcccaatcacgggaaaaggaaaaatatttacaagtgtaaaaaaaaaacgcctattgttcaaaatgt 50904707  T
Q  95 cactactaatctatg 109  Q
    |||||||||||||||    
T  50904708 cactactaatctatg 50904722  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 50904860 - 50904912
Alignment:
Q  187 tcttgaaatgaagattggttcaagtaggacacgggaatcacaaaccgcttcat 239  Q
    ||||||||||||| |||||||||||||||||   | |||||||||||||||||    
T  50904860 tcttgaaatgaagtttggttcaagtaggacatatggatcacaaaccgcttcat 50904912  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 50911939 - 50911991
Alignment:
Q  189 ttgaaatgaagattggttcaagtaggacacgggaatcacaaaccgcttcatct 241  Q
    ||||||||||| |||||||||||| |||  ||| ||||||||||| |||||||    
T  50911939 ttgaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatct 50911991  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 55084858 - 55084806
Alignment:
Q  187 tcttgaaatgaagattggttcaagtaggacacgggaatcacaaaccgcttcat 239  Q
    ||||||||||| | |||||||||||| ||||  || |||||||||||||||||    
T  55084858 tcttgaaatgatggttggttcaagtaagacatagggatcacaaaccgcttcat 55084806  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 1754311 - 1754361
Alignment:
Q  189 ttgaaatgaagattggttcaagtaggacacgggaatcacaaaccgcttcat 239  Q
    ||||||||| |||||||||||||| || ||||| |||||||||||||||||    
T  1754311 ttgaaatgacgattggttcaagtatgatacggggatcacaaaccgcttcat 1754361  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33492986 - 33492942
Alignment:
Q  1 tatgtcattcatatagacaattttcgcccattttcccaataaagg 45  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||    
T  33492986 tatgtcattcatatagtcaattttcacccatattcccaataaagg 33492942  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 27424580 - 27424634
Alignment:
Q  185 attcttgaaatgaagattggttcaagtaggacacgggaatcacaaaccgcttcat 239  Q
    ||||||||||||||| |||||||||||| || || ||||||||||||||| ||||    
T  27424580 attcttgaaatgaaggttggttcaagtatgatactggaatcacaaaccgcctcat 27424634  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 27502875 - 27502929
Alignment:
Q  187 tcttgaaatgaagattggttcaagtaggacacgggaatcacaaaccgcttcatct 241  Q
    ||||||||||||| ||| ||||| || ||||  ||||||||||||||||||||||    
T  27502875 tcttgaaatgaagtttgattcaaatatgacattggaatcacaaaccgcttcatct 27502929  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 27505768 - 27505822
Alignment:
Q  185 attcttgaaatgaagattggttcaagtaggacacgggaatcacaaaccgcttcat 239  Q
    ||||||| ||||| | |||||||||||| || || ||||||||||||||||||||    
T  27505768 attcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcat 27505822  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 27523469 - 27523523
Alignment:
Q  185 attcttgaaatgaagattggttcaagtaggacacgggaatcacaaaccgcttcat 239  Q
    ||||||| ||||||| ||||||||| || || || ||||||||||||||||||||    
T  27523469 attcttggaatgaagtttggttcaaatatgatacaggaatcacaaaccgcttcat 27523523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 27526178 - 27526232
Alignment:
Q  185 attcttgaaatgaagattggttcaagtaggacacgggaatcacaaaccgcttcat 239  Q
    ||||||| ||||| | |||||||||||| || || ||||||||||||||||||||    
T  27526178 attcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcat 27526232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 27476760 - 27476707
Alignment:
Q  186 ttcttgaaatgaagattggttcaagtaggacacgggaatcacaaaccgcttcat 239  Q
    |||||| ||||| | |||||||||||| || || ||||||||||||||||||||    
T  27476760 ttcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcat 27476707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 27414370 - 27414418
Alignment:
Q  185 attcttgaaatgaagattggttcaagtaggacacgggaatcacaaaccg 233  Q
    ||||||||||||| | |||||||||||| || || ||||||||||||||    
T  27414370 attcttgaaatgagggttggttcaagtatgatacaggaatcacaaaccg 27414418  T

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